Apodemus sylvaticus (European woodmouse): 127668459
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Entry
127668459 CDS
T10613
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60 isoform X1
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127668459
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127668459
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
127668459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
127668459
NCBI-ProteinID:
XP_052018070
LinkDB
All DBs
Position
18:59399152..59524147
Genome browser
AA seq
1710 aa
AA seq
DB search
MEKKYTRFSEIMSNLILEAMPKADYSSLFNDFVESEFFLIDGDSLLITCVCEKSLEPGQS
LHFFYKVERYLLDVISKGGQFAIVFFKDAEYAYFSVPELLTLRTALILHLQKNTTIDVWT
TFSNCLSEEWSIRLEQSCPYFLILADEGVNNLQTHFFNFVVIQAWAAKVNIVLFSGQMSD
ILRLYAYFMQSSHEKQMFFKKYERLIMIVYKSLIQHLKNCRDTALTRLFGDLKFNDMEEE
VCQTVCLLQQLWPEGSDIRRVFCVTSCSLFLEMYHCYLENREKGASVETSEVKQKTDNCL
TLKDVEDFCKLHCLSVAFLLHLPLSQRARSRFITSRWIQDLKTVLKMKKWCEYFILSNVD
MFESWSLNLLHLSDLSDEPLLKNIAFYYENENTKGLDLNVGDAIMKEYVCLWDTVSELVR
KFDVGEAIPLRTTKVHFLEKKPSPIKGSSQEMMPNLGFIPMSCNLVDEFAGDILKDLPFL
KSDDPIVTSLVKHKEFDDLVHWHSHRPLSDDYDRTRANFEDKRDPSCLRALQKYHVFQRF
YGRSLESVTSKVITTQGPMPKKGCVKSKSTKARETKAEIIRRENKKRLIVEEEQKEEQKW
NALSFSIEEEMRKNLNSGMKKLEEFLKSCKSSSVKAQVERVGLQTCLKAWKDHCRAEGET
TKDLSIAVNMMKRIHSLLDKHSELLQEADQKLIARCLMYLGFYELADSLYPTQDATDDIK
TKKKNKYSVGIGPARFQLQYMGQYLLREERKDPDPRVQDFIPDTWQRELLDVVDNYESAV
IVAPTSSGKTYASYYCMEKVLKESDEGVVVYVAPTKALVNQVAATVENRYTKNMPAGASL
CGVFTREYRHEVLNCQVLITVPACFEILLLSPHRQNWVKRIRYVIFDEVHCLGGEIGAEV
WEHLLVMIRCPFLALSATISNPQHLTEWLQSVKRYWKQVDSTMEKSSVSKRNAASRGSYH
KDRAQARQSYKVRLVLYEERYNDLEKYLCSVRQGDVCFGHFHPCAALTTDHIEKYGFPSD
LTFSPRESIQLYDTMCQVWKSWPQAQNLCPENFTQFKNKIVIKKPDARKYEESLKEEFTN
WVKNGNEEEARMVLKKLSPDYHDHSERMLDFFPLLVEKLREMDKLPALFFLFKLGTVEEC
AENAYEFLEAKQEEKRPPKADKEAHIMANKLRKVKKSLEKQKIIDEKGQKSSRRLDQSIM
YEAEHDHLLKSLEKNLEIPKDCTYADQKAIDEESLQMVFRRVKYERKGGTLKRLARRGIG
YHHSSMSAKEKQLVEILFRKGFIRVVTATGTLALGINMPCKSVVFAQNSVYLDALNYRQM
SGRAGRRGQDLLGDVYFFDIPLPKVGKLIKSKVPELRGQFPLSISLILRLMLLATKADDL
EDGKAKALSVLKHSLLSFKQPRATDMLKLYFLYSLQFLVKEGYIDQEGNPTGFAGLVSHL
HYHEPSNLVFVSFLVKGLFHKLCQPTSKGSKRFSEDVMEKLVLVLANLFGRKYIPAKFYE
VNSKFYQSKVFLDDLPADFSDALLEYNRQVTEDFASFLLIVSRLADMKQEYQLPLSKIEF
TGKECEDSPLVSHLMNCKEGRVAVSPFACLSGNFDVDLLSPGVPDNVILHTIGIDHRQAP
VLWPHRLDSQGRKMPLNAYALDFYKHGSLTGLVQDNRIHPGEVYYLLKDFSLTIKTISVS
LRELCENEEDNVVLAFEQLSTSFQEKFDLV
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaaatacacaaggttttcagaaataatgtcaaatttaatcttggaagctatg
ccaaaagctgactattccagtttattcaatgattttgtcgaatcggagttctttctgatt
gacggcgactccttgctcatcacctgtgtgtgtgagaagtcacttgagccaggacagagt
ctccactttttctacaaggttgagcgctacctgttggatgttattagcaaaggaggacaa
tttgccatagttttcttcaaggacgctgagtatgcatacttcagtgtccctgaacttttg
acactgagaactgctttaattctgcatcttcagaagaataccaccattgacgtgtggact
acgttttctaactgcttgtcagaagagtggagcattcgcttggagcagagttgcccatat
ttcttgatactggcagatgagggtgtgaacaacctgcaaacacatttcttcaactttgta
gtcattcaggcctgggcagcaaaggtcaatattgtcctcttctcagggcagatgtctgac
atcctccgtctttatgcatactttatgcaaagctcacatgaaaagcagatgtttttcaag
aagtatgagagactgattatgattgtttacaaaagcctgattcaacatttgaaaaattgc
agagatacggctttaacgcgtctatttggagatttaaaattcaatgatatggaagaggag
gtatgtcaaactgtatgtctgctgcagcaactctggccagaagggtctgacatccgacgt
gtcttttgtgtcacctcatgttctctcttcttggaaatgtaccactgctacttagaaaac
agagagaagggagcatctgtggagacatccgaagtcaaacagaaaacagataattgctta
accctgaaggacgtggaagacttttgtaaactacattgcctcagtgtggcttttctgctc
catttacctctctcccagagagctcgctcaagattcatcacttctcgttggattcaggac
ctcaagactgttttaaaaatgaaaaagtggtgcgagtattttatcctaagtaatgtggat
atgtttgaatcttggagtctgaatttacttcacctctctgacttaagtgatgagcctttg
ttgaagaatattgctttttactatgaaaatgaaaatacaaaaggcttggatttgaatgtt
ggagatgccatcatgaaagagtatgtatgtctctgggacactgtgtcagaattggtcaga
aagtttgatgtgggagaagcaattcctttgaggacaacaaaagttcattttcttgaaaag
aaaccatcaccgatcaaaggaagttctcaggagatgatgccaaatttaggttttattcca
atgtcatgtaatttagttgatgaatttgctggagacattttgaaagacttgcctttccta
aagagtgatgaccctattgttacatcactggtgaagcataaggagtttgatgaccttgtg
cactggcattcccacagaccactcagtgatgattatgacaggacaagggccaattttgaa
gacaaaagagatcccagttgtcttagagctttgcagaagtatcatgtttttcagcgattt
tatgggaggtcattagaatcagtcacttcaaaggtcatcacaactcaaggtcctatgcca
aagaagggttgcgttaagtccaagagcacaaaggcacgtgagaccaaggctgaaataatt
agaagagagaataagaagaggttaattgttgaggaagaacaaaaagaagagcaaaaatgg
aatgccctgtcattttctattgaggaggaaatgagaaagaatctaaactctggaatgaag
aaattggaagagttcttgaaatcatgtaaaagtagctcagtaaaagctcaggttgaaaga
gttggcttacagacttgtttgaaagcctggaaggaccattgccgagctgaaggtgaaacc
acgaaagacttaagcatagctgtcaacatgatgaagagaattcactccttgttggacaaa
cactctgaacttttgcaagaggcagatcagaaactcattgccagatgtcttatgtattta
gggttttatgagctcgcagattctttatatccaactcaggatgcaacagatgacataaaa
acgaagaaaaagaataaatattcagttgggattgggccggctcggttccaactacaatat
atgggtcagtatttgttgcgagaagaaagaaaagacccagaccccagggtccaagatttt
attcctgacacgtggcagcgagagctcctggatgtggtggataactatgagtctgcagtg
attgttgcccccacatcgtccggcaaaacgtatgcttcctactactgcatggaaaaggtg
ctgaaggagagcgatgaaggcgtagtcgtgtatgtcgcaccaacaaaggctcttgttaat
caagtggcagcaactgttgaaaatcgttataccaaaaatatgccagctggtgcatctctg
tgtggtgtttttactagggagtatcgtcatgaggtcctcaactgtcaggtgcttattacc
gtgcctgcctgctttgaaattctgctactatctcctcatcgccaaaactgggtgaagagg
atcagatacgttatatttgacgaggtccattgtcttggtggagaaatcggagcagaagtc
tgggagcatctccttgtcatgatccgatgtccctttttggccctttcagctaccattagc
aaccctcagcatctcactgagtggctccagtcagtaaagcgatactggaagcaagtagac
agtaccatggagaaaagctctgtttccaaaagaaatgctgcctcccgtggcagctatcac
aaagaccgagcgcaagcccggcagtcatacaaagttagacttgtgctctatgaagagaga
tacaatgatctagagaagtatttgtgttctgtgagacagggcgatgtttgctttggtcat
tttcatccttgtgctgcactaaccacagatcatattgaaaagtacggttttccttcggat
ctcaccttttcaccccgagaaagcatccagctgtatgacactatgtgccaggtctggaag
agttggccccaggcccagaacctatgtccagagaacttcactcaatttaagaataaaata
gtcattaaaaagccagatgctagaaaatatgaagagagcttaaaggaagaattcacaaat
tgggttaaaaatgggaacgaggaggaggccaggatggtgctgaagaaactgagtcctgat
taccatgaccactcagagaggatgctggacttctttccacttcttgttgagaagttaagg
gaaatggacaagttgcctgcactcttctttttatttaaattaggtactgtagaagaatgt
gctgaaaatgcttacgaattcctggaggcaaaacaggaggagaaaagacctcccaaagct
gataaagaggctcacatcatggctaacaaacttcgaaaagttaaaaaatctctggagaaa
caaaagataatagatgaaaagggccagaaatcttccagaagattggatcaaagcattatg
tatgaagctgaacatgatcacctcctgaagagtctggagaagaatctagagatccccaag
gactgcacatatgccgatcagaaggcaatagatgaggagtcattgcagatggtgtttagg
cgggtgaaatacgaacgaaaaggtggcacactgaagaggttggcaagaaggggcattggc
tatcatcacagttccatgagtgccaaagaaaagcagttggtggaaatcctcttcaggaaa
ggattcatcagggtggtgacagctactggaacacttgctttgggaatcaacatgccctgt
aaatctgtggtttttgctcaaaactcagtctacttggatgctttaaattacagacagatg
tctggtcgggccggaagacgagggcaagacctgctgggtgatgtctacttttttgatatt
ccactgcccaaagtaggaaaactcataaaatccaaagttcctgagctgagaggacagttt
cccctcagtatctcactcatcctgagactcatgttgctggctaccaaggcagatgaccta
gaggatggcaaggcaaaggcactgtcagtgctgaagcattcattgctatccttcaaacaa
ccccgagccacagacatgttaaagctttacttcttatattctttgcagttcctggtaaaa
gagggttatatagatcaagaaggtaatcctacagggtttgctggccttgtctcacattta
cattaccatgaaccttcaaatctcgtgtttgtcagttttcttgtaaaaggtcttttccat
aaactttgtcagccaacaagtaaaggctcaaaacgtttttctgaagatgtaatggaaaag
ctggttttagtattggcaaatctttttggaagaaaatatattccagccaagttctatgag
gttaactccaagttttatcaatcaaaggtgttccttgatgacctccctgccgacttcagt
gatgccctgcttgagtacaacaggcaagtgacagaagactttgcttcctttctgctgatt
gtatcccgattggctgatatgaaacaggagtatcaactccccttgtcaaaaatcgagttc
acaggtaaagaatgtgaagattcaccacttgtgtctcacttgatgaactgcaaggaagga
agggtggcggtttcgccctttgcttgtctctctggaaactttgatgtggacttgcttagt
ccaggagttccagataatgtcattctgcacacgattggtatcgatcacagacaagcccca
gtgctgtggccacacagattggacagtcaaggaagaaaaatgccacttaatgcctatgca
cttgatttctataagcatggatcccttactggattagtccaggacaatagaatacatcca
ggggaagtttattatctgttgaaagatttttctcttaccattaaaactatcagtgtctcc
ttgcgtgaactgtgtgaaaatgaagaagacaatgttgttttagcatttgaacaattgtct
acgtcttttcaggagaagtttgatttagtgtga
DBGET
integrated database retrieval system
