Apodemus sylvaticus (European woodmouse): 127668537
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Entry
127668537 CDS
T10613
Symbol
Col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04151
PI3K-Akt signaling pathway
asyl04382
Cornified envelope formation
asyl04510
Focal adhesion
asyl04512
ECM-receptor interaction
asyl04820
Cytoskeleton in muscle cells
asyl04926
Relaxin signaling pathway
asyl04933
AGE-RAGE signaling pathway in diabetic complications
asyl04974
Protein digestion and absorption
asyl05146
Amoebiasis
asyl05165
Human papillomavirus infection
asyl05200
Pathways in cancer
asyl05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
127668537 (Col4a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
127668537 (Col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
127668537 (Col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
127668537 (Col4a2)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
127668537 (Col4a2)
09154 Digestive system
04974 Protein digestion and absorption
127668537 (Col4a2)
09158 Development and regeneration
04382 Cornified envelope formation
127668537 (Col4a2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
127668537 (Col4a2)
09162 Cancer: specific types
05222 Small cell lung cancer
127668537 (Col4a2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
127668537 (Col4a2)
09174 Infectious disease: parasitic
05146 Amoebiasis
127668537 (Col4a2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
127668537 (Col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
asyl04147
]
127668537 (Col4a2)
00536 Glycosaminoglycan binding proteins [BR:
asyl00536
]
127668537 (Col4a2)
Exosome [BR:
asyl04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
127668537 (Col4a2)
Glycosaminoglycan binding proteins [BR:
asyl00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127668537 (Col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
127668537
NCBI-ProteinID:
XP_052018125
LinkDB
All DBs
Position
18:7008310..7147859
Genome browser
AA seq
1708 aa
AA seq
DB search
MDRVRFTASGPPLRGWLLLATVTVGLLAQSVLGGVKKLDVPCGGRDCSGGCQCYPEKGAR
GQPGVVGTQGYNGPPGLQGFPGLQGRKGDKGERGVPGPTGPKGDVGARGVSGFPGADGIP
GHPGQGGPRGRPGYDGCNGTRGDAGPQGPSGSGGFPGLPGPQGPKGQKGEPYALSKEDRD
KYRGEPGEPGLVGYQGPPGRPGPIGQMGPVGAPGRPGPPGPPGPKGQPGNRGLGFYGQKG
EKGDIGQPGPNGIPSDIPLAGPTTTTYPVDLYKQGEKGDEGDQGTPGITLKGEEGIMGFP
GIRGFPGLDGEKGDIGQKGSRGLDGFQGPSGPRGPKGERGEQGPPGPPAYSPHPSLAKGA
RGDPGFQGAHGEPGSRGEPGDPGPMGPPGPSAGDEDSKRGLPGEMGPKGFSGEPGVPARY
PGPPGIDGQPGPQGVPGPAGPPGPDGFLFGLKGSEGRVGYPGPSGFPGTRGQKGWKGEAG
DCQCGQVIGGLPGLPGPKGFPGANGELGKKGDQGDPGLHGIPGFPGFKGAPGVAGAPGPK
GVKGDSRTITTKGERGQPGVPGVHGMKGDDGVPGRDGLDGFPGLPGPPGDGIKGPPGDAG
LPGVPGIKGFPGEVGPPGQGLPGPKGERGFPGDAGLPGPPGFPGPPGPPGTPGQTDCDTG
VKRPIGGGQQVVVQPGCIEGPTGSPGQPGPPGPTGAKGIRGMPGFPGVSGEQGLKGFPGD
PGREGFPGPPGFMGPRGSKGATGLPGPDGPQGPIGLPGPAGPPGDRGIPGEVLGAQPGTR
GDAGLPGQPGLKGLPGEIGAPGFRGSQGMPGMPGLKGQPGFPGPSGQPGLSGPPGQHGFP
GAPGREGPLGLPGSPGLGGLPGDRGEPGDPGVPGPVGMKGLSGDRGDAGVSGERGHPGSP
GFKGMAGMPGIPGQKGDRGSPGMDGFQGMLGLKGRQGFPGIKGEAGFFGVPGLKGLPGEP
GVKGNRGDRGPPGPPPLILPGMKDIKGEKGDEGPMGLKGYLGLKGIQGMPGVPGVSGIPG
LPGRPGFIKGAKGDIGVPGTPGLPGFPGVSGPPGITGFPGFTGSRGEKGTPGVAGVFGET
GPTGDFGDIGDTVDLPGRPGLKGERGVTGTPGLKGFFGEKGAEGDIGFPGITGMAGAQGS
PGLKGQTGFPGLTGLQGPQGDPGRVGIPGDKGDFGWPGVPGLPGFPGIRGISGLHGLPGT
KGFPGSPGVDGHGDPGLPGPTGDRGDRGEANTLPGPVGAPGQKGERGTPGERGPVGSPGL
QGFPGISPPSNISGLPGDVGAPGIFGLQGYQGPPGPPGPNALPGIKGDEGSFGAAGFPGQ
KGWVGDPGPQGQPGVFGLPGEKGPKGEQGFMGNPGPSGAVGDRGPKGPKGDQGFPGAPGS
VGSPGIPGIPQKIAAQPGTMGPQGRRGLPGALGEIGPQGPPGDPGFRGAPGKAGPQGRGG
VSAVPGFRGDQGPMGHQGPIGQEGEPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMC
PVGMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKS
YWLSTTAPLPMMPVAEEEIKPYISRCSVCEAPAVAIAVHSQDVSIPHCPAGWRSLWIGYS
FLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYFANKYSFWLTTIPEQNF
QSTPSADTLKAGLIRTHISRCQVCMKNL
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggaccgagtgcggttcacagcgtctggccctcccctacgagggtggctgctgctagcg
actgtgacagtggggctcctggctcagagcgtcttggggggtgtgaagaagttggatgtg
ccctgcggagggagagactgcagcgggggttgccagtgctacccagagaaaggagcacgg
ggtcagccaggagtagtgggcacccaggggtacaatggccccccagggttgcaaggattc
ccaggactacagggccgcaaaggagacaagggtgaacggggagtccctggaccaactgga
ccaaaaggagatgtgggagcgagaggcgtctctggattccccggtgcagatggaattcct
gggcacccagggcaaggcggaccccgaggaaggccaggctatgatggttgcaatggaacc
agaggagacgccggtccacaggggccctctggatccgggggtttccctggcctccctggg
ccccaaggacccaagggacagaaaggtgaaccttacgccctctccaaagaagatcgtgac
aaataccggggtgaacctggagagcctggcctggtcggctaccaggggcctcctggccgc
ccagggccaataggacagatgggtcccgtgggagcacctggaagaccgggaccaccagga
ccccctggacccaaaggacaaccaggcaaccgaggactaggtttttacggacagaagggt
gaaaagggtgacataggacaaccgggacccaatgggattccatctgacatccctcttgct
gggcccaccacgacaacataccccgtggatctgtacaagcagggtgaaaagggggatgaa
ggagatcaagggacacccggcataaccttaaaaggcgaggaaggcatcatgggattccca
ggaatacggggttttcctggccttgatggagaaaagggagacataggacagaaaggaagc
agaggcctggatggtttccaaggccccagtggaccccgaggacccaagggagaacgtggg
gaacaaggacccccaggaccccctgcctactcaccccatccatccctggcaaaaggtgct
agaggtgacccaggattccaaggtgcacatggggagccaggaagccgaggcgagcccgga
gaccctggacccatggggcccccaggcccatccgcaggagatgaagattcaaagagaggc
cttccaggggagatgggacccaaaggcttctcaggagaaccaggggtcccagcacgctat
cctggcccaccaggaattgatggacaaccaggtccccaaggagtccctgggcctgcaggt
ccacctggaccagatggcttcctgtttggcctgaaaggatcagaagggagagtgggttat
cccggaccctcaggtttcccaggaacccgagggcagaaaggatggaaaggtgaagctgga
gactgccagtgcggccaggtcatcgggggtcttccaggactgccgggacccaaaggtttc
cctggtgccaatggggagctcggaaagaaaggtgaccaaggagacccaggcctgcatggt
atccctgggttcccaggattcaagggagccccgggcgtcgctggagctcctggacccaaa
ggagtgaagggagactctagaacaatcactaccaaaggtgagcgaggacagccaggtgtc
cctggtgtacatgggatgaaaggggacgacggtgtcccaggacgtgacgggctggatggg
ttccctggtctgcctggtcctccgggtgatggaatcaaaggccctccaggggatgcaggt
ctccctggcgtacctggaatcaagggctttccaggagaagtgggtcctccaggacagggc
ttaccaggcccgaaaggcgagcgtggtttccctggagacgctgggttgcctggacctccg
ggcttccctggtcctccaggtcccccaggaaccccaggacagacagattgtgacacagga
gtgaaaaggcctatcggaggtggccagcaagtggtcgttcagccaggttgcattgaaggc
cccacaggatcacctggccagccaggccccccaggccccacaggtgccaaaggcatcaga
ggaatgccaggattcccaggagtttctggagaacaaggactcaagggctttccgggagac
ccaggtcgcgaaggcttcccaggacccccagggttcatgggaccccgaggatccaaaggt
gccacaggcctccctggcccagatggaccccagggccccattggactgccagggccagct
ggaccccctggggacagagggattccaggagaagtgctaggggcccaacctggtacccgc
ggagatgctggactaccaggacagcctgggctaaaagggctcccaggagaaataggagca
cctggattcagaggaagccaagggatgcccgggatgccaggacttaaaggtcagccaggc
ttcccaggaccatcaggacagccgggactgtctgggcccccaggacagcatggattccca
ggggctcctggccgagaggggcctttggggctgccaggctcccctggccttggaggtttg
cctggagacaggggcgagcctggtgaccctggtgtgccaggccctgtgggcatgaaaggt
ctctctggggacagaggtgacgccggtgtgtcaggcgagcgtggccatcccggaagccct
ggatttaaaggaatggcagggatgcctggtatccctgggcagaaaggcgatcgagggtca
cctggaatggatggcttccagggcatgctgggacttaagggaagacagggtttcccagga
atcaaaggagaagcaggattctttggagttcctggtttgaagggcctgcctggcgagcca
ggggtcaaaggaaaccgaggggaccggggccccccaggaccacctcctctcatcctgcca
gggatgaaggacatcaagggagaaaagggagatgaagggccaatgggcctgaaaggctac
ctgggcttaaaaggcatccaaggaatgcctggggtccccggggtgtctggaatccctggg
ctacctggaaggcctggcttcatcaaaggagccaagggagacattggagtccctggcaca
ccaggcttgccaggatttcctggggtgtctggccctcctggaattacggggttcccagga
ttcacaggaagccggggtgagaagggtactccaggagtagcaggggtctttggcgagact
ggccctaccggggacttcggtgatatcggggacactgtggacttaccaggaagaccaggc
ctgaagggggagcggggagtcaccggaactccaggtctcaaggggttctttggagagaaa
ggagctgagggtgacattggatttcctgggataacaggcatggccggagctcagggctct
cctggactcaaaggacagacaggctttccagggctcacaggactgcaagggccacaggga
gatcctggacgggtcggaatacctggtgacaagggtgacttcggctggccgggcgtgcca
gggttaccaggttttccaggaatccgagggatcagcggattacacggtctgccaggcacc
aaaggcttccccggatccccaggtgttgatggccatggagacccagggctcccaggcccc
actggagacaggggtgaccggggagaggccaacacacttccaggccctgtgggagctcca
gggcagaaaggggaacggggaaccccaggggaacgtggcccagttggaagcccaggactt
cagggtttccctggtatctctccaccatccaacatctctgggttacccggtgatgtaggc
gcaccaggaatatttggcttgcaaggctaccaaggccccccaggaccacctgggccaaat
gcacttcctggaatcaaaggagatgaggggagctttggagctgcaggattccctggacag
aaaggatgggttggggacccagggccccagggccagcctggtgtatttggtcttccaggg
gagaaagggcccaagggtgaacaaggattcatgggcaaccctgggccgtccggggctgtg
ggtgaccgcggccccaaaggacccaaaggcgaccaaggattcccaggtgctcctggctcc
gtgggatccccaggcatcccgggcatcccccagaagattgctgcccagcctgggaccatg
ggtcctcagggcaggagaggccttccgggtgcactgggagagatagggcctcagggtcct
cctggagatccaggtttccgtggagccccaggcaaggctgggccccagggcagaggtggc
gtgtccgctgttccagggttccggggagaccaagggcccatgggacaccagggtccaatt
ggccaggaaggggagccaggccgtccagggagcccaggcctgccagggatgccaggccgc
agtgtgagcattggctacctcctggtgaagcacagccagacggaccaggagcccatgtgc
ccggtgggcatgaacaagctctggagcgggtacagcctgctgtacttcgagggccaggag
aaagcgcacaaccaggacctagggctggcaggctcctgcctggcacgcttcagcacgatg
cctttcctgtactgcaatccgggggacgtctgctactacgccagccgcaacgacaagtcc
tactggctctccaccacggcccctctgcccatgatgccggtggctgaggaagaaatcaaa
ccgtacatcagccgctgctctgtgtgcgaggctccggccgtagccattgccgtccacagc
caagacgtctctataccccactgcccggccgggtggcggagtttgtggattggatattca
ttcctcatgcacactgcagctggggatgaaggcggtggccagtcactggtgtcaccgggc
agctgtctggaggacttccgcgcaacgccctttatcgagtgtaacgggggccgtggtacc
tgccactacttcgctaacaagtacagcttctggctgaccacaatccctgagcagaacttc
cagagcacaccatccgctgacacactcaaggctggcctcatccgcacgcacatcagccgc
tgccaagtgtgcatgaagaatctgtga
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integrated database retrieval system
