KEGG   Apodemus sylvaticus (European woodmouse): 127668538
Entry
127668538         CDS       T10613                                 
Symbol
Col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
asyl  Apodemus sylvaticus (European woodmouse)
Pathway
asyl04151  PI3K-Akt signaling pathway
asyl04382  Cornified envelope formation
asyl04510  Focal adhesion
asyl04512  ECM-receptor interaction
asyl04518  Integrin signaling
asyl04820  Cytoskeleton in muscle cells
asyl04926  Relaxin signaling pathway
asyl04933  AGE-RAGE signaling pathway in diabetic complications
asyl04974  Protein digestion and absorption
asyl05146  Amoebiasis
asyl05165  Human papillomavirus infection
asyl05200  Pathways in cancer
asyl05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:asyl00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    127668538 (Col4a1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    127668538 (Col4a1)
   04518 Integrin signaling
    127668538 (Col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    127668538 (Col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    127668538 (Col4a1)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    127668538 (Col4a1)
  09154 Digestive system
   04974 Protein digestion and absorption
    127668538 (Col4a1)
  09158 Development and regeneration
   04382 Cornified envelope formation
    127668538 (Col4a1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    127668538 (Col4a1)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    127668538 (Col4a1)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    127668538 (Col4a1)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    127668538 (Col4a1)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    127668538 (Col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:asyl04147]
    127668538 (Col4a1)
   00536 Glycosaminoglycan binding proteins [BR:asyl00536]
    127668538 (Col4a1)
Exosome [BR:asyl04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   127668538 (Col4a1)
Glycosaminoglycan binding proteins [BR:asyl00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   127668538 (Col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 127668538
NCBI-ProteinID: XP_052018127
LinkDB
Position
18:complement(6892610..7008036)
AA seq 1669 aa
MGPRLSVWLLLLLAALLLHEESSRAAAKGDCGGSGCGKCDCQGVKGQKGERGFPGLQGVI
GFPGMQGPEGPHGPPGQKGDAGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGHVPGTLLKGERGFPGF
PGMPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGEQGVSGPP
GEPGHAQAKQKGDFTSTGEKGQKGEPGFPGVPGRAEKGEPGKQGPRGKPGKDGEKGEKGS
PGFPGDSGYPGLPGRQGPQGEKGEAGLPGPPGTVIGTGPLGEKGERGYPGAPGLRGEPGP
KGFPGTPGQPGPPGFAIPGQTGAPGFPGERGEKGDQGFPGVSLPGPSGRDGAPGPPGPPG
PPGQPGHTNGIVECQPGPPGDQGPPGTPGQPGLTGEVGQKGQKGESCLACDMEGLRGPPG
PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGSPGLIGQPGAKGEPGEIFFDMRLK
GDKGDPGFPGQPGMPGRAGTPGRDGHPGLPGPKGSPGSIGLKGERGPPGGVGFPGSRGDI
GPPGPPGVGPIGPVGEKGQAGFPGGPGSPGLPGPKGEAGKVVPLPGPPGAAGLPGSPGFP
GPQGDRGLPGTPGRPGIPGEKGAEGQPGIGFPGLPGPKGVDGLPGDIGRPGSPGRPGFNG
LPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGNIGGPGVPGEQGLTGPPGLQGI
RGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPG
LPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEQVDMGSMKGQKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPG
LPGEKGVPGIPGSQGVPGLPGEKGAKGEKGQSGLPGIGIPGRPGDKGDQGLAGFPGSPGE
KGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGT
PGPTGPAGQKGEPGSDGIPGSAGEKGEQGLPGRGFPGFPGTKGDKGSKGEVGFPGLAGSP
GIPGAKGEQGFMGPPGPQGQPGLPGTPGHPVEGPKGDRGPQGQPGLPGHPGPMGPPGFPG
IDGPKGDKGNPGWPGTPGAPGPKGDPGFQGMPGIGGSPGVTGSKGDMGLPGVPGFQGQKG
LPGLQGVKGDQGDQGVPGPKGLQGPPGPPGPYDVIKGEPGLPGPEGPPGLKGLQGPPGPK
GQQGVTGSVGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGLPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq 5010 nt   +upstreamnt  +downstreamnt
atggggccccggctcagcgtctggcttctgctgctgctcgccgcccttctgctccacgag
gagagcagccgagccgctgcgaagggtgattgtggtggctctggctgtggaaaatgtgac
tgtcaaggcgtgaagggacaaaagggagaaagaggcttcccaggtttacaaggtgttatc
ggattccctgggatgcaaggacccgaggggccacatggaccaccaggacaaaagggtgat
gctggagaacctggacttcctggcacaaaagggacaagaggaccccctggagcagctggc
taccccgggaaccccggacttcctggtattcctggccaagatggtcctccaggtccccca
ggtatcccaggatgcaacggtacaaagggagagcgagggccgctgggtcctcccggcttg
cctggattcagcgggaatcctggaccaccagggttaccggggatgaagggagatcctggt
gaaattctcggccatgttcctggaacactgctgaaaggggagagaggatttcctggtttc
cccgggatgccgggctcaccagggttgccaggactacagggacctgtgggtcctccagga
tttactggaccaccgggtcctccaggccctcctggacctcctggagagaaggggcagatg
ggctccagcttccaaggaccgaaaggtgacaagggagagcaaggagttagtggtcctccg
ggagaacctggacatgcacaagctaagcaaaaaggagactttacctcaactggagaaaag
ggtcagaaaggtgaacccggattcccgggagtgccaggacgtgcagagaaaggtgaaccc
ggcaagcaagggcctcgggggaaacctgggaaagatggtgaaaaaggagaaaaggggagc
ccgggctttcctggtgattccgggtacccaggtctcccaggccggcagggccctcaggga
gagaagggtgaagctgggcttccaggcccccctggaactgtgataggcactgggcctttg
ggagagaaaggagagagaggctacccaggagcaccagggttaagaggagagcccggccct
aaaggtttccctggaacaccaggccagccaggccctccaggtttcgctattccaggccag
actggtgctccaggcttcccaggtgaaagaggagaaaaaggtgatcaaggatttccaggt
gtgtctttaccaggaccaagtggaagagatggagccccagggcctcccggccctcccggc
ccccctgggcagccaggccatacaaatggcattgtggagtgtcaacctggaccacctggg
gaccagggtcctcctgggactccaggacagccaggtttgacaggcgaagttggacagaaa
ggtcagaaaggagagagctgccttgcctgtgacatggaaggacttcgaggccctccaggg
ccacaggggcctccaggagagattggtttccctggacagcctggggctaaaggtgacaga
ggcctgcctggcagagacggtcttgaaggattgccaggtccacaaggttccccagggctt
ataggccagcctggagctaagggagagcctggagagatattttttgacatgcgactcaaa
ggtgacaaaggagacccaggttttccaggacagcccggcatgccaggaagagcaggaact
cccggcagagatggccacccaggactccctggacccaaaggctccccgggttcaataggg
ttgaagggagagcgaggtccccccggaggagttggcttccctggcagtcgtggagacatt
ggccctcctggtcccccgggagttggtcccattggtcctgttggtgagaaaggacaagca
ggctttcctggaggccccgggtccccaggtcttccaggtccaaagggtgaagcaggaaag
gttgtcccactccctggtcccccaggagctgcaggacttccaggatcccctgggtttcca
gggccacaaggtgaccgaggcttgccaggaaccccaggacgtccaggcatcccgggagag
aagggtgctgagggccagccaggaattggatttcccgggcttcctggccccaaaggagtt
gacggcttgcctggagacataggacggcctgggagtccaggtcgccctggatttaacggc
ttacctggcaaccctggaccgcaaggccaaaagggagaacctggcattgggcttccaggc
ctcaaagggcagccaggccttccaggcattcccggtacccccggagagaagggcaacatc
gggggaccaggcgttccaggagaacagggcttgactgggccccccggactccagggcatc
agaggtgacccaggacctcctggagttcaaggccctgcaggtccaccaggggttccaggc
ataggaccacctggagctatgggccctcccggagggcaaggaccaccagggtcatcaggc
ccacctggagttaaaggagagaaagggttccctggattcccaggactggacatgcctggc
cccaaaggcgataaaggctctcaaggacttcccggcctcacaggacagtcgggcctccct
ggccttcctggacagcaggggactcctggagttccagggttcccaggttctaaaggcgaa
atgggcgtcatgggaactccgggacaaccaggttcaccaggaccagcaggcaccccaggg
ttacctggagagaaaggggaccatggccttccaggttcctcaggacccaggggcgaccct
ggcttcaaaggtgataaaggtgacgttgggcttcctggcatgccaggatccatggagcag
gtggacatggggagcatgaagggacagaaaggagaccagggagagaagggacaaattggg
cccactggtgataaaggttcccgaggagaccctggaacaccgggagtgcctgggaaggac
gggcaggctgggcatcctggacagccaggacctaaaggtgacccaggccttagtggaaca
ccaggatcccctggacttcctgggcccaaaggatcggttggaggcatgggcttgccaggt
ttgcctggagaaaaaggtgtgcccggcatccctggctcacagggtgtccccggcttaccc
ggagagaaaggagccaagggagagaaagggcagtcaggtctgcctggcattgggattccc
ggacggcctggtgacaagggagaccaggggcttgcaggcttcccaggcagccccggtgag
aagggagagaaaggcagtgctggaaccccagggatgccagggtccccaggcccaaggggt
tcaccagggaacatcggtcatccaggaagcccgggcctacctggagagaaaggggacaaa
ggcctcccaggactggatggtgttcccggtgtcaaaggagaagcaggtctccctggaacc
cctggccccacaggcccagctggccagaagggggagcccggcagtgatgggatcccgggg
tcggctggagagaagggtgaacaaggtcttccaggaagaggcttcccaggcttcccaggc
accaaaggagacaaaggttccaagggtgaagtaggtttccctggcctagctggaagtcct
ggaattcctggagccaaaggcgagcaaggattcatgggtcctcccggccctcaaggacaa
ccgggcttacctggcactcctggtcaccccgtggaggggcccaaaggagaccgaggacct
cagggtcaacctggccttccagggcatccgggacctatgggcccaccagggttcccagga
atcgatgggccaaaaggtgacaagggaaatccaggttggccaggaactcctggggctcca
ggccctaagggagacccaggattccaaggcatgccgggcattggcggctctccaggggtc
acaggttcaaagggagatatgggactgcccggagttccaggattccaaggtcagaaaggt
cttcctggcctgcagggagtaaagggcgatcagggagatcaaggtgttcctggccctaaa
ggtctccaaggtccccctgggcccccaggtccctacgatgtcatcaaaggagaaccaggg
ctccctggtcctgagggtccccctggtctgaaaggactccagggaccaccaggtccaaaa
ggacagcaaggtgtgacaggctcagtgggcttgcctggacccccaggtgttcctgggttc
gatggcgcccctggccagaaaggagagactggaccctttggaccaccgggtccaagaggg
cttcctggtccaccaggccctgatgggctgccaggatccatgggtcccccaggtacccca
tctgtggaccatggcttccttgtgaccaggcacagtcagacaacagacgacccactgtgt
cccccagggaccaaaattctttaccatggatactctctcctctatgtccaaggcaatgag
cgtgctcacgggcaggacttgggtacggctggcagctgtctgcgcaagttcagcaccatg
cccttcctcttctgcaacatcaacaacgtgtgcaacttcgcctccaggaacgactactcc
tactggctgtccacgccagagcccatgcccatgtccatggctcccatctctggggacaac
atccggcccttcattagcaggtgtgcagtttgcgaagcgcccgccatggtgatggcggtc
cacagtcagaccatccagatcccgcagtgccccaacggctggtcctcactgtggatcggc
tattccttcgtgatgcacaccagcgctggtgctgaaggttctggccaagcccttgcatcc
cctgggtcctgtctggaagagtttagaagtgccccgttcatcgagtgccacggcagaggg
acgtgcaattactatgcaaatgcttacagcttttggctcgccaccatagagagaagcgag
atgttcaagaagcccacgccatccaccttgaaggcaggggagctgcgcacgcacgtcagc
cgctgccaagtgtgcatgagaagaacataa

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