Apodemus sylvaticus (European woodmouse): 127669108
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Entry
127669108 CDS
T10613
Symbol
Dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127669108 (Dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asyl03041
]
127669108 (Dhx16)
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127669108 (Dhx16)
Spliceosome [BR:
asyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
127669108 (Dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_30
SecA_DEAD
Flavi_DEAD
nSTAND3
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-GeneID:
127669108
NCBI-ProteinID:
XP_052018914
LinkDB
All DBs
Position
19:complement(1516916..1528095)
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AA seq
1043 aa
AA seq
DB search
MATPAGLERWVQEELHSVLGLSERHVAQFLIGTAQRCASAEEFVQRLRDTDTLDLGGPAR
DFALRLWSKVPRKAVVEKPARAAEREARALLEKNRSYKLLEDSESGEEAVGANESSLQKK
RKRRKHLRKKHQEEEEEEEVSESGKQKTGGSKSPTEEKPASEDEWEKTERERLQDLEERD
AFAERVRQRDKDRTRNVLERSDKKAYEEAQKRLKMAEEDRKAMVPELRKKSRREYLAKRE
REKLEDLEAELADEEVLFGDVELSRHERRELKYKRRVRDLAREYQAAGEQEKLEATNRYH
MPKETRGQPARAVDIVEEESGAPGEEQRRWEEGRLGAASLKFGARDAAAQEPKYQLVLEE
DETIEFVRAAQLQGDEEPSSGPPLSAQAQQKESIQAVRRSLPVFPFREELLTAIANHQVL
IIEGETGSGKTTQIPQYLFEEGYTKKGMKIACTQPRRVAAMSVAARVAREMGVKLGNEVG
YSIRFEDCTSERTVLRYMTDGMLLREFLSEPDLASYSVVMVDEAHERTLHTDILFGLIKD
VARFRPELKVLVASATLDTARFSAFFDDAPVFRIPGRRFPVDIFYTKAPEADYLEACVVS
VLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQAR
IFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKAS
ANQRAGRAGRVAAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHF
DFLDPPPYETLLLALEQLYALGALNHLGELTTSGRKMAELPVDPMLSKMILASEKYSCSE
EILTVAAMLSVNNSIFYRPKDKVVHADNARVNFFLPGGDHLVLLNVYTQWAESGYSSQWC
YENFVQFRSMRRARDVREQLEGLLERVEVGLTSCQGDYVRVRKAITSGYFYHTARLTRSG
YRTVKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHYYKA
KELEDPHAKKMPKKVGKTREELG
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccggcggggctggagcggtgggtgcaggaggagctgcactccgtgctgggg
ctgagcgagcggcacgtcgcgcagtttctgatcggtacggcgcagcgctgcgcctcagcc
gaggagtttgtgcagcgtctgcgcgacaccgacactctggacctgggcgggccggcgcgg
gacttcgcgctgaggctctggagcaaggtgccacggaaagccgtggtggaaaagccagct
cgggcagctgagcgagaggcccgagccctgctggagaagaaccgttcttataagttgttg
gaagacagcgagagtggtgaggaggcagtgggcgctaacgagagcagcctccagaagaag
cggaagagaaggaaacacctcaggaagaaacaccaggaggaggaagaggaggaagaggtt
tctgagtcagggaagcagaagacaggggggagtaaatcacccacggaggagaagccagcc
tcagaggatgagtgggagaagactgagcgtgagcgtctccaggacttggaggaacgggat
gcctttgcagagcgggttcggcagcgggacaaggaccggaccaggaatgttctggagcgg
tcagataagaaggcttatgaagaggctcagaagcgcctcaagatggctgaggaagaccgg
aaggccatggtccctgagctccgtaagaagtcccgtcgggaatacctggcgaagcgggag
cgggaaaagctagaggacctggaggcggaactggccgacgaggaggtcctttttggggac
gtggagctgagccgccatgagcgcagggagctcaagtacaagcgacgtgtgcgtgacctg
gctcgggagtaccaggcagctggcgagcaggagaagctggaggccactaatcgctaccac
atgcccaaggagactcgaggacagccagctcgagctgtggacatcgtggaggaggagtca
ggtgccccgggagaggagcagcggcgctgggaggagggccggctgggtgctgcatccctt
aagtttggggcccgagatgctgctgcgcaggagcccaagtaccagctggtgctggaggag
gacgagaccatcgagtttgtccgtgctgctcagctccagggtgacgaggagccgtcctca
ggcccacccctgtcagcccaggcccagcagaaggagtccatccaggctgtgcgccgcagc
ctgccagtgttccccttccgagaggagctcctgactgccatcgccaaccatcaggtcctc
atcatcgaaggcgagactggctccgggaagaccacacagatcccacagtacctctttgag
gagggttacacaaagaagggcatgaagattgcttgcacccagccccggagggtggcggcc
atgagtgtggcagcccgagtggcccgggagatgggtgtgaagcttgggaatgaggtgggc
tacagcatccggtttgaggactgcacatcagagagaactgttctccgctacatgacagat
ggaatgctgctccgggagttcctctctgagcctgaccttgcaagttacagtgtggtgatg
gtggatgaagctcatgagcggaccttgcacacagacattctctttgggttgatcaaagac
gttgctagattccgacctgagctcaaggtcctggtggcttcagccacactggatactgcc
cgtttttctgccttctttgatgacgcccctgtcttccgaatccctggacgcaggtttcca
gttgacatcttctataccaaggccccagaggctgactacctggaagcctgtgttgtgtct
gtgctgcagatccatgtgacccagccccctggggatatcctggtgttcctgacaggacag
gaagagattgaggctgcctgtgagatgctccaggaccgctgccgcaggctgggctccaaa
atccgggagctcctggtgctgcccatttatgccaacctgccctcagacatgcaggctcgc
atcttccagcccacaccccccggggcccggaaggtggtggtggcaacaaacattgcagaa
acttcccttaccatcgaaggcatcatttatgtgctggatccagggttctgcaagcagaag
agctacaaccctcgcacaggcatggagtcgctcacggtcacaccctgcagcaaggcttca
gccaatcagcgggctggccgcgcaggtcgagtggctgctgggaagtgcttccgcctgtat
acagcctgggcctatcagcatgagctggaggagaccacagttcctgagatccagaggaca
agcctgggcaacgttgtgctgctgctaaagagcttagggatccacgacctgatgcacttt
gatttcctggaccctcctccatacgagaccctgctgctggctttggaacagctttatgca
cttggcgccctcaaccaccttggagaactcaccacgtctggtcgaaagatggcagagctg
cctgtggatcccatgttgtctaaaatgatcttggcctctgagaagtacagctgttcagaa
gagatcctgaccgtggctgctatgctgtctgtcaacaattccattttctaccggcccaag
gataaggtcgtccatgccgacaatgcccgtgtcaactttttcctccctggtggggaccac
ctggttctgctcaatgtgtacacacagtgggccgagagtggctactcttcccagtggtgc
tatgaaaacttcgtacagttcaggtccatgcgccgagcccgggatgtgcgggaacaattg
gaggggctcttggagcgtgtggaagtcggcttgacttcttgccaaggtgactacgttcgt
gtgagaaaggccatcacttcgggttatttttaccacacagcaaggctgactcggagtggc
taccgcacagtgaaacagcaacaaacagtgtttatccatcccaactcctctctctttgaa
caacagccacgctggttgctctaccatgagcttgtcttgaccacaaaggaattcatgaga
caggtattggagattgaaagtagctggcttttggaagtggctccccactactataaggcc
aaggagctagaagatcctcatgctaagaaaatgcccaaaaaagtcggcaagacacgagaa
gagctgggctag
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