Apodemus sylvaticus (European woodmouse): 127669924
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Entry
127669924 CDS
T10613
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03013
Nucleocytoplasmic transport
asyl03015
mRNA surveillance pathway
asyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127669924 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
127669924 (Ddx39b)
03015 mRNA surveillance pathway
127669924 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127669924 (Ddx39b)
03041 Spliceosome [BR:
asyl03041
]
127669924 (Ddx39b)
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
127669924 (Ddx39b)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127669924 (Ddx39b)
Spliceosome [BR:
asyl03041
]
Complex C
Other components
EJC/TREX
127669924 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
127669924 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
127669924
NCBI-ProteinID:
XP_052020132
LinkDB
All DBs
Position
19:3503179..3516067
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AA seq
436 aa
AA seq
DB search
MADVGGPTPRENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTG
QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGT
PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS
KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI
FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD
IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS
ELPDEIDISSYIEQTR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgttgggggaccaacaccgcgagagaacgatgtggacaatgagctcttggac
tatgaagacgatgaggtggagacagccgctggggcagatgggaccgaagctcccgccaag
aaagacgtcaagggctcctacgtctccatccacagctcgggctttcgagatttcctactc
aagccagagttgctgcgggccatcgtcgactgtggctttgagcatccatcagaggtccag
catgagtgcatccctcaggccattctggggatggatgtcctgtgccaggccaagtcaggc
atgggcaagacagcagtgtttgtcctggccacactgcagcaactggagccggttactggg
caggtgtctgtgctggtgatgtgtcacaccagggagctggcttttcagatcagcaaggaa
tatgagcgtttctcaaagtacatgccgaatgtcaaggtggcagtgttttttggcggtctg
tctatcaagaaggatgaagaggtgctgaagaagaactgcccacacattgtcgtggggact
cctggccggatcctagccctggctcggaataagagcctgaacctcaaacacattaaacac
tttatcttggacgagtgtgacaagatgcttgaacagctcgacatgcgtcgggatgtccag
gaaatttttcgcatgaccccccatgagaagcaggtcatgatgttcagtgctaccttgagc
aaagagatccgcccagtctgccgcaagttcatgcaagatcctatggagatcttcgtggat
gacgagaccaagttgacgctgcatgggttgcagcaatactacgtgaaactgaaggacaac
gagaagaaccggaagctctttgatcttcttgatgtcctcgagttcaaccaggtggtgatc
tttgtgaagtccgtgcagcgctgcatcgccctggcccagcttctagtggagcagaacttc
ccagccattgctatccaccgcgggatgccccaggaggagaggctctctcggtatcagcag
ttcaaggatttccagcggaggattctcgtggctaccaacctgtttggtcgaggcatggac
attgagcgtgtgaacatcgctttcaactatgacatgccagaagattcagacacttacctg
cacagggtggccagagcgggccggtttggcaccaaaggcttggccatcacgtttgtgtca
gatgagaacgatgccaagatccttaatgacgtgcaggaccgttttgaagtcaacatcagc
gagctgcccgacgagatcgacatttcttcctacattgagcagacgcggtag
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