Apodemus sylvaticus (European woodmouse): 127670070
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Entry
127670070 CDS
T10613
Symbol
Skic2
Name
(RefSeq) SKI2 subunit of superkiller complex protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127670070 (Skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127670070 (Skic2)
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
127670070 (Skic2)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127670070 (Skic2)
mRNA degradation factors
3'-5' decay
Ski complex
127670070 (Skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
ALTTAQ_rpt
Motif
Other DBs
NCBI-GeneID:
127670070
NCBI-ProteinID:
XP_052020341
LinkDB
All DBs
Position
19:complement(3102137..3113808)
Genome browser
AA seq
1244 aa
AA seq
DB search
MMETERLVLPPPDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGIEHSTRKWQRKTDPWSLLAVLETPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPGPGLLSLSRLLEPLDLSGGDEDEGEAAGGPREDAAS
ASPSCTPLARASSLEDLVLKEASTVVSTLEPPKPPPQEQWAVPVDVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
QALADLTKRLGALEEPDVTGQLADLPEYYSWAEELTETRNMIQRRIMESVNGLKSLSVGR
VVVVKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPVVSENPRDKGPATSDVPHPDDLV
GFKLFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDYSKRQQPKFRKDPPLAAVT
TAVQELLRLAQAYPAGPPTLDPVNDLQLKDVAVVEGGLRARKLEELIHGAQCVHSPRFPA
QYVKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC
AMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVA
KRIGEVQVACGLSQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQR
LAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagcgactcgtgctgcctcccccagatcccctgaacctgccccttcgg
gctctggaagtggggtgcactggccgttgggagctgctgaacgtcccagggcctccagag
agcactcttccccatggcctccctccgtgtgccccagatctgtgtcaggaagcagagcag
ctgtttctgtcgtctccggcctggcttcccctacatggtatagagcactcaactcgaaaa
tggcagaggaagacagatccctggtcactcctggctgttctggagactccagtcccatcc
gaccttcaggcccagcgacacccaaccacaggccatatactgggctataaggaggtcttg
ctggagaacacgaatctgtcagccacaacctccttgtcccttcgccggcctccagggcca
gcctcccagtcactatggggcaatcctacacagtaccctttctggccaggcgggatggac
gagcccagcataactgatctgagtactcgggaggaagccgaggaggagatagactttgag
aaagatcttctcaccgtcccacctggcttcaagaaaggggtggattttgcccccaaagat
cacccagctcctgggccaggtctgctcagcctcagccgtctgctggagcctctagatctg
agtggaggcgatgaggatgagggagaggcagcaggaggccccagagaggacgccgcctca
gcctccccgtcctgcacccccctggcccgggcaagcagcttggaggatctagtgttgaag
gaagcttccacggtcgtatccaccctggagcctcccaaacctccacctcaggaacagtgg
gctgtgcccgtggatgtcacctctcctgtgggcgatttctaccgtctcatccctcagcca
gccttccagtgggcgttcgagccggatgtgttccagaagcaggccatcctgcacttggag
cggcacgactctgtcttcgttgcagcgcacacgtccgcggggaagacggtggtggctgag
tatgccattgctctggcccagaaacacatgacccggaccatctacacttctcctatcaaa
gccctgagtaaccagaaatttcgggacttccgaaacacattcggggacgtggggctgctc
acaggggatgtgcagctgcacccagaggcctcctgcctcatcatgaccacagagatcctt
cgctccatgctgtacagtggctccgacgtcatccgagacctggagtgggtcatctttgat
gaagtccactacatcaacgatgctgagcgtggggttgtgtgggaggaggtgctcatcatg
ctcccggaccacgtctccatcatccttctgagcgccaccgtccctaacgccctggagttt
gctgactggattgggcggctgaagaggcggcagatctatgtgatcagcacggtggcccgc
cctgtgccgctggagcactatctcttcacaggaaacagccccaagacacagggcgagctc
ttcctgctgctggactcccgtggggccttccacaccaaggggtactacgctgcagtggag
gccaagaaagagaggatgagcaagcacgcccagaccttcggggccaagcagcccacgcac
cagggcgggcctgcgcaggaccgtggggtgtacctgtccttgctggcttccctccggacc
cgggctcagttgccagtggtagtgttcaccttctcccgaggccgctgtgatgagcaggct
tcgggcctcacttcccttgacctcacaacaagctcggagaagagtgagatccacctcttc
ctgcagcgctgccttgcacggctccgaggctctgaccgacagctaccccaggtcctgcac
atgtcggagctccttcgccgaggcctgggtgtgcaccacagtggcatcctgcccatcctt
aaggagattgtggagatgcttttcagcaggggcctggtcaaggtcttgtttgctacggag
acttttgccatgggagtaaacatgcctgcaaggacagtggtgtttgactccatgcgcaaa
cacgatggctctaccttccgggacctgctgcctggggagtacgtgcagatggcaggccgg
gcaggccggaggggcctggaccccacaggcaccgtcatccttctctgtaagggccgagtg
cctgagatggcagatctacaccgtatgatgatggggaaaccatcccagcttcagtcccag
ttccgcctcacatataccatgatcctcaacctactgcgggtggacgccctcagagtggaa
gatatgatgaagaggagcttctcagagtttccttctcgcaaggacagcaaggcccatgag
caggctctggctgacctcaccaagaggctgggggctttggaggagcctgatgtgactggc
cagttggctgacctgcctgagtattacagctgggcggaggagctgaccgagacccggaac
atgatccagcgacgcatcatggagtctgtgaatgggctgaaatctctctcagtgggaagg
gtggtagttgtgaagaatgaggaacatcacaatgcactgggtgtgatccttcaggtctcc
tcaaactccaccagcagggtatttacaacattggtcttgtgtgataagcctgttgtgtct
gagaacccaagggacaaggggccagccacttcagatgtgccccacccagatgaccttgtc
ggcttcaagctgttcctgcctgaagggccctgtgagcacacggtggccaagctccagcca
ggagatgtggctgccatctctaccaaagtgctccgggtgaatggggagaagatctctgag
gactacagcaagaggcagcaaccgaaattcaggaaggaccctccccttgcagctgtgacc
actgctgttcaggagctgctgcgtctggctcaggcttatccagcaggacccccaaccctt
gaccctgtcaacgacctgcaactcaaggatgtggcagtggtcgaaggtgggctccgggcc
cggaagctggaggagctgatccacggagctcagtgtgtgcacagcccccggtttcctgcc
cagtatgtgaagctgcgggagcgaatgcagattcagaaggaaatggagaggctgcgcttc
ctcctgtccgaccagtcgctgttgctgctccccgagtaccaccagcgtgtagaggtgctc
cggaccctgggctatgtggatgaggctggcacggtgaagctggcgggccgagtggcctgc
gccatgagcagccacgagctgctcctcactgaactcatgtttgataacgcactgagcgct
ctgcggccagaggaaatcgcggctctgctctctggcctggtgtgccagagccccggggac
cctggggatcagctcccaagcaccctcaaacagggggtagaacgcgtcaaagctgtggcc
aagcgaattggtgaggttcaggtggcctgtggcctgagccagacagtggaggagtttgtg
ggagagctgaatttcgggctggtggaggttgtgtatgaatgggcccggggtatgcccttc
tccgagctggcagggctctcagggacccctgaaggcttggtcgtccgctgcatccagcga
ctggccgagatgtgtcgctcgcttcgaggagcagcccgtttggtgggagagcctgtgctg
ggtgccaagatggagacggcagccaccttgctacggcgggacattgtctttgcagccagc
ctttacacccagtaa
DBGET
integrated database retrieval system
