Apodemus sylvaticus (European woodmouse): 127670453
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Entry
127670453 CDS
T10613
Symbol
Pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127670453 (Pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127670453 (Pan2)
Enzymes [BR:
asyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127670453 (Pan2)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127670453 (Pan2)
mRNA degradation factors
3'-5' decay
Pan complex
127670453 (Pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
PEP5_VPS11_N
VPS11_N
Motif
Other DBs
NCBI-GeneID:
127670453
NCBI-ProteinID:
XP_052020869
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All DBs
Position
20:complement(4843455..4861716)
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AA seq
1258 aa
AA seq
DB search
MNFEGLDPGLAEFSPAMHSTLDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGSDDIR
QIQSLENGILFLTKNNLKYVARGGLIIFDYLLDESEDLHSLLLTDNNTLLVGGLQNHILE
LDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRSFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDHEFDNLSQVTESPTGREE
EPLHTVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPV
RCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSD
EASGKGSLARLIQRWNRFILTQLHQDMQELEVPQAYRGAGGSSFCSSGDSIIGQLFSCEM
ENCSLCRCGSETVRASSTLLFTLSYPEGSICDKTGKNYEFAQVLKRSICLEQNTQAWCDN
CEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRLQAEVAFKIAVKKIGGEMKSKEFA
LADRKELRSSEGFLCCSSIEELKNVWLPFSIRMKMTKNKGLDVCNWTDEHEVQWGPARAE
EEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPID
KYEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFIP
LMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEGI
PFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVGH
GLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDART
ALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWRVPEPESQTSPKRSALVPSLFTL
VSVILSPDRCSCLLLSAGTVSCPPFQCSVPRTERWLLKSALPCPLPDLDLLRVYRRCY
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgagggtctggatcctggactggccgaattttccccagctatgcattctacc
ctggacccagtcctggatgcccacctgaatccaagtttgctacagaatgtggagctggac
ccagagggagtggccttggaggctcttcccgtccaggagtcagtgcacataatggaaggt
gtctactctgagttgcacagcgtggtggctgaagtgggagtgcctgtgtctgtctcccac
tttgatttacatgaggagatgctgtgggtggggagccatgggggccacgccacgtccttc
ttcggtccagctctggagcgctactcatcctttcaggtcaacggcagtgatgacattcgg
cagatccagagcctggagaacggtatccttttcctcaccaagaacaacctcaagtacgtg
gcccgagggggcctcattatatttgactacttgctggatgagagcgaggatctgcacagt
ctcctcctgacggacaacaacacactgcttgttggcgggctgcagaaccacattctggag
ctcgacttgaatactgtccaggagactcaaaagtatgcagttgagacccctggagtcacc
atcatgagacagacaaatcgcttcttcttctgcggccacacgtctggcaaggtttccctg
cgagacctccgtagttttaaagtggagcatgaatttgatgccttctcagggagtctgtca
gattttgatgttcatggcaatctgctagctgcctgtggcttctccagccgcctcaccggc
ctggcctgtgaccgtttcctcaaggtgtacgacctgcgcatgatgcgtgccatcacgccg
cttcaagtgcacgtggatccagccttcttgcgattcatccccacgtacacttcccgcctt
gctatcatctcccagtcaggtcaatgccagttttgtgaacccacaggcctggccaacccc
gctgacatcttccatgtgaatcccgtgggacctttgctaatgacgtttgatgtgtcagcc
agcaagcaggccctggcctttggggattccgagggctgtgtgcatctctggactgattcc
cctgagccgtccttcaacccctactcccgagagactgaatttgctctgccctgtcttgtg
gactctttgcctcctctggactggagtcaggatctgttgccgctttccctcattcccgtc
ccacttaccacggacacgttgctctctgactggcctgctgccaactctgctcctgctccc
aggcgagcaccacctgtggatgcagaaattcttcgaactatgaagaaagtgggcttcatt
ggctatgctcccaaccctcgcaccaggctgcggaaccagattccctatcgactaaaggag
tcagaccatgaatttgacaacttgagccaagtcacggagtcaccgacaggacgagaagag
gagcctctccacacagtctctaagaagtaccggaaggtaaccatcaaatattccaagcta
ggactggaagactttgacttcaagcactacaacaagactctgtttgctgggctagagcct
cacatccccaacgcctactgtaactgcatgatccaggtgctctacttcttggagcctgtt
cgctgtctgatccagaaccacctttgccagaaggagttctgcctggcatgcgagcttggc
ttcctcttccacatgctagacctctctcgtggcgatccttgtcagggcagtaatttcctc
cgagctttccggaccatccccgaggcctcagcactgggtctcatcctcgctgactcagac
gaggcttcaggcaaaggcagtctggccaggctcatccagaggtggaaccgcttcatcctc
acccagctgcaccaggacatgcaggagctggaagtgccccaggcttaccgaggtgctgga
ggcagcagtttctgctcatcaggggactccatcatcgggcagctgttcagctgtgagatg
gagaactgcagcctctgccgctgcggcagcgagaccgtgcgggcctcgtccaccctgctg
ttcacgctctcctaccctgagggtagcatctgtgataaaaccgggaagaactatgagttt
gctcaggtgctgaagcgaagtatctgcctggagcagaacacacaggcctggtgtgacaac
tgcgagaagtaccagcccacaattcagacccgcaacatccgacatctgcccgatattctt
gtcattaattgtgaagtgaatagttcaaaagaggctgatttctggagactgcaagctgag
gttgccttcaaaatagcagtgaagaagattggcggggaaatgaagagcaaggagtttgct
ttagctgaccggaaggaactgaggagctcagagggctttctctgttgctcctccatcgag
gagctgaagaatgtctggcttccattttccatccgcatgaagatgaccaagaacaaaggg
ctggatgtttgcaactggaccgatgagcatgaggtgcagtggggtccagccagggcagag
gaagagcatggtgtctatgtatatgacctgatggctactgtggtacacatcctggactca
cgaacaggaggcagcttggtggctcacatcaaagtcggcgagacctaccaccagcgcaag
gagggtgtgacgcaccagcagtggtatctcttcaatgacttccttattgaacctattgat
aagtatgaagccgtgcagtttgacatgaattggaaagtacccgctatcctgtattatgtc
aaaaggaatctcaattccagatacaacctgaacatcaagaaccccatcgaggctagcgtg
ctgctggcagaggcctcgctggcacggaagcaacggaaaacacatactaccttcattcca
ctgatgctgaatgagatgccgcaggtgggggacctggtaggcctggacgctgagtttgtc
actcttaatgaggaagaagcagagttacgcagtgacggcaccaagtccaccattaagccc
agccagatgtcggttgccaggatcacctgtgttcggggccaagggcctaacgaggggatc
cccttcattgatgactacatctccacgcaggagcaggtagtggattacttgacgcagtac
tccgggataaagccaggggaccttgatgccaaaatctcctcaaagcacctcacgactctc
aagtcgacctacttaaagcttcgcttcctcatcgacattggagtcaagtttgtgggtcac
ggtctgcagaaggacttccgggtcatcaatctcatggtgcccaaggaccaagttcttgat
acagtctacctgttccacatgccccgaaaacgaatgatttccctacgattccttgcttgg
tactttctggacctgaagattcaaggtgagactcacgacagcattgaggatgcccgcacg
gcccttcagctctaccgcaaatatctggagctaagcaagaacggcactgagcccgagtcc
ttccacaaggtgctcaagggtctctacgagaagggccgcaagatggactggagggtgcct
gagcccgaaagccagacaagtcccaagaggagtgccctggtgccttctctgttcaccctg
gtctccgtaattctgtctcctgacagatgcagctgtcttctcctcagtgctggcactgtg
agctgccctccctttcagtgctctgtccccagaactgagaggtggcttctcaagtcggct
ttaccctgtccacttccagacctggatctgctcagggtctacagacggtgctattaa
DBGET
integrated database retrieval system
