KEGG   Apodemus sylvaticus (European woodmouse): 127671418
Entry
127671418         CDS       T10613                                 
Symbol
Taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
asyl  Apodemus sylvaticus (European woodmouse)
Pathway
asyl03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:asyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    127671418 (Taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asyl03021]
    127671418 (Taf5l)
   03036 Chromosome and associated proteins [BR:asyl03036]
    127671418 (Taf5l)
Transcription machinery [BR:asyl03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     127671418 (Taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     127671418 (Taf5l)
Chromosome and associated proteins [BR:asyl03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     127671418 (Taf5l)
    STAGA complex
     127671418 (Taf5l)
    TFTC complex
     127671418 (Taf5l)
    SAGA complex
     127671418 (Taf5l)
    SLIK complex
     127671418 (Taf5l)
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_SCAP Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT122_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR41 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_RIG_2nd Tricorn_2nd Beta-prop_DCAF4 Beta-prop_SPT8 RMC1_N Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR19_1st PEP5_VPS11_N WD40_like Beta-prop_IP5PC_F PROPPIN Ge1_WD40 WD_LRWD1 Nbas_N
Other DBs
NCBI-GeneID: 127671418
NCBI-ProteinID: XP_052022046
LinkDB
Position
21:5328296..5354203
AA seq 589 aa
MKRVRTEQVQVAVSCYLKRRQYVDSEGPLKQGLRLSQTPEEMAANLTVQSESGCANAVSA
APCQAEPQQYEVQFGRLRSFLTESDSQYSREVMPLLYPLFVYLHLNLVQSGPKSTVESFY
SRFHGMFLQNASQKDIIEQLQTTQTIQDILSNFQLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGGSSRSESSSLEPPDVPNPILQNEAALE
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSK
KLKSEPHHVDTSRIRLACDTLEEEENEEDNTGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR
STCCNTPADGSSGELVGVYTGQMSSVLSVQFMACNLLLVTGVTQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgagtgcgcacggagcaggttcaggtggcagtgtcctgctacctcaaacgccgg
cagtacgtggactcggaaggccctttgaagcaaggcctgagactctcacagacccctgag
gagatggcggcaaacctcacagtccaatcagaatctggttgtgccaatgcggtgtctgca
gccccttgccaggcagagccccagcaatatgaagtacagtttggacgactgaggagcttt
ctaactgagtctgactcccagtacagccgcgaggtcatgcctctcctctatcctctcttt
gtctacctccacctcaacctggtccagagcggccccaagagcaccgtggaaagcttctat
agtcgcttccatggaatgttcctgcagaatgcaagtcagaaggacatcatcgagcagctc
caaaccacacagaccatccaggacattctgtcaaatttccagcttcgtgcattcctggac
aacaagtacgtagtccgtctccaggaagatagctacaactaccttatccgctacctccaa
agcgacaacaacactgccctgtgcaaggtgctcgccgtgcacattcacttggacgtgcag
cctgccaagaggacagactaccagctgtatgccagtgggggctcctcccgcagcgaaagc
agcagcctggagccaccagatgtgcccaatcctattctgcagaacgaggctgccctggaa
gtcttgcaggaaagcatcaagagggtcaaggatggccctccctccctcaccaccatctgc
ttctatgccttctataacacagaacagctgctgaatacggcagagatctcctctgatagc
aagctgctggctgctggctttgacaactcctgcataaagctctggagcttgcgatccaaa
aagctgaaatcggagccccaccatgtggacacatcccgaatccgtctagcttgtgacact
ctggaggaggaggagaatgaagaagataatacaggcacagagatgaagatcctgcgggga
cactgtggcccagtatacagcacacggttcctcgcagacagctcagggctgctctcttgt
tctgaagacatgtctatcaggtactgggacttggggagcttcaccaacactgtgctgtat
cagggacatgcctaccctgtgtgggacgtggacatcagcccctacagcctgtactttgcc
agtgggtcccatgaccgtaccgccaggctgtggtcttttgatcggacgtacccgctgagg
atatatgcaggacacctggcagatgtggactgtgtcaaattccaccccaactcaaactac
ttagctacaggttccactgacaaaactgtccggctgtggagtgcccagcaggggaactcg
gtgcggctcttcacgggccaccgaggccccgtgctctccctctccttttctcccaacggt
aagtacttggcatctgctggtgaggaccagcggttaaagttgtgggacttggcctctggg
acactttttaaagaactgagaggccacacggatagcatcaccagtctggcctttagccca
gacagtggtctgatcgcttctgcctccatggacaactctgtgcgtgtctgggacatcaga
agcacatgctgcaacacacctgctgacggctcttcgggtgagctcgtgggcgtgtacact
gggcagatgagcagcgtcctgagtgtacagttcatggcctgcaacctcctcctggtgaca
ggagtcacacaagagaatcaagaacactga

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