Apodemus sylvaticus (European woodmouse): 127671870
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Entry
127671870 CDS
T10613
Symbol
Cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127671870 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127671870 (Cnot1)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127671870 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127671870 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
127671870
NCBI-ProteinID:
XP_052022882
LinkDB
All DBs
Position
21:34690822..34770910
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVTRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgactcggcacggc
cctgaggcagacaggcatttgttacgctgcctgttttcacatgtggatttcagtggcgat
ggtaagagcagcggcaaggatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcgacattgtcatatgccattgataatccattgcac
taccagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagtaaagtacaagaggtcatttttggtcttgcccttttgaattcttctagcccagat
ctcaggggatttgctgcccagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacacctcctactctcccatctcctctttgggcagaagggagcctttggagttggacag
gaacagatagacgctttccttaagacactacgcagagattttccccaggagcgctgtcct
gtggtgcttgcaccacttttataccctgaaaaacgggacattctaatggacaggattttg
cctgattctggaggggtagctaaaaccatgatggagagctcgctggctgacttcatgcag
gaagtgggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggtgttcgagaggtcacagctgcccaggttgccagggttttgggaatgatggctcggact
cactcaggattaacagatggtattccattacagagcatctctgctcctggcagtgggatc
tggagtgatggaaaagataaaagcgagggggcacaggctcacacgtggaacgtagaggtt
ttgattgatgttcttaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgacagcaaaggacttcacaatgtggtttatggc
attcagaggggtttgggcatggaggtgtttccagtagattttatatataggccttggaaa
catgcagaaggccagctctccttcatccagcactccctgataaacccagaggtcttctgt
ttcgctgactacccctgtcacactgttgccactgatattttgaaagcaccaccagaggat
gacaatcgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggctt
gcagaggttgggcagtatgagcaagtgaaacagctcttcagcttccctatcaaacattgt
ccagacatgttggtattggccttacttcagatcaacacttcctggcacaccctccgccat
gaactcatctctactttgatgccaatatttcttggaaaccatcctaactctgccattatt
ttgcactacgcatggcatgggcagggacagtctccatcaattcgccaacttataatgcat
gcaatggcagaatggtacatgagaggggagcagtatgaccaggccaaattgtctcgaata
cttgacgtggcccaggacttgaaggccttgtcgatgctgctcaacggcactccgtttgcc
ttcgtcattgaccttgctgcacttgcctctcgccgtgaatacctcaaactggacaagtgg
ctcacagacaagataagggagcatggggagccttttatacaagcatgtatgaccttttta
aaaagaagatgcccttctattttgggtggacttgcaccagagaaagatcagcccaaaagt
gctcaacttcctgctgaaactctagcaacaatgttggcttgtctgcaggcttgtgcaggg
agtgtttctcaagagttatcagagactatcctcaccatggtggcaaattgcagtaatgta
atgaataaggccagacagcccccacctggagttatgccgaagggccgccctcctagtgct
agcagcttagatgccatttctccggtgcagattgaccctcttgctgggatggcatcactt
agtataggtggttcagctgcccctcacacccagagcatgcagggttttcctccaaatttg
ggttctgcgttcagtacccctcagtcaccagcaaaagcatttccaccactttcaacccca
aatcaaacaacggctttcagtggtattggaggactttcctcacagcttccagtaggtggt
cttggcacaggaagcctgactggcataggaactggggcccttggacttcctgcagtgaac
aatgacccttttgtacagagaaaactgggcacctctggactcaaccagcctacattccag
cagagtaagatgaaaccttccgacttgtctcaggtttggccagaggcaaatcagcacttt
agtaaagaaatagatgatgaagcaaacagctatttccagcgaatatataatcacccccca
cacccaaccatgtccgtggatgaggtattagaaatgctgcagagatttaaagactctaca
ataaaaagggagcgagaagtatttaactgtatgctgaggaacttatttgaagaatatcgg
tttttcccccagtaccctgataaagaattacatataacagcctgcttgtttggtggcata
attgaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaa
gccttacggaagccttttggatctaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggactaccctcagtattgtcaacacctggcttctatcagtcac
tttatgcagtttccacatcatttgcaggagtacatcgagtatggacaacagtctcgagat
cctcctgtgaaaatgcagggctctatcactacccctggaagtattgcactggcccaggcc
caggcccaggcccaggttccagcaaaagctcctcttgcaggtcaggttaacacaatggta
accacctcaacaaccaccactgttgctaaaacggttacagtcaccaagccaacgggagtc
agctttaagaaagatgtgccaccttctataaatacaacaaatatcgatacattgcttgtg
gccacagatcaaactgagaggattgtggagcccccagaaaatattcaagagaaaattgct
tttattttcaacaatctctcacagtcaaatatgacacagaaggttgaagagcttaaagaa
actgtgaaggaagaatttatgccttgggtttcccagtatctagttatgaaaagagtcagt
attgagccaaactttcatagcctgtattcaaactttcttgatacattgaagaatcctgaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagtgctgctgacttctgat
aaagctgcggccaatttctcagatcgttctttgctgaagaacttgggacattggttagga
atgatcacattagctaaaaataaacccatcttacacacggacttggatgtgaagtctttg
ctgttagaggcttatgtcaaaggacagcaggagctgctctatgtcgtgccctttgttgcc
aaagttctagagtccagcattcggagtctggtttttagaccaccaaatccctggacaatg
gcaattatgaatgtattggctgagctgcaccaggagcatgacttaaagttaaacttgaag
tttgagattgaggtgctctgtaagaaccttgcattagacatcaatgagcttaaacctgga
aacctgttgaaagacaaagatcgcctgaagaacctagatgaacaactctctgctccaaag
aaagatgtcaaacagccagaagagcttcctgccatcacaacaacaacaacttctacaaca
ccagctaccagtactacgtgtacagccacagttcccccacagccacagtacagctaccac
gacatcaatgtctattctctagcaggcctggcacctcatattactctaaaccctacaatc
cctttatttcaagctcatccgcagttgaagcagtgtgtgcggcaggccattgaacgagct
gtgcaggagctagtgcaccctgtggtggaccgctcaattaagattgctatgaccacctgt
gaacagatagtcagaaaggactttgccctggattctgaggaatctagaatgagaatagct
gctcatcacatgatgcggaacttgacagctggaatggctatgattacttgcagggaacct
ttgctgatgagcatatctaccaacctaaaaaacagttttgcctcagcccttcgtactgca
tccccacagcaaagggaaatgatggaccaggccgctgctcagttagctcaggacaattgt
gagttagcttgttgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgaggaaacacgctcggcaggaaggacgcagatac
tgtgaccctgtggtgttaacgtatcaagcagagcgcatgccagagcagatcaggctaaaa
gttggtggtgtggacccaaagcagctagctgtctatgaagagtttgcacgaaatgtgcct
ggcttcttacccacaaatgacttaagtcagcctacagggtttttagctcagcccatgaag
caagcttgggcaacagatgatgtagctcagatttatgataagtgtatcacagaactggag
cagcacctacatgccattccaccaactttggctatgaatcctcaagcccaggctctccga
agtcttttagaggttgtagtattgtctcggaattctcgggatgcgatagctgctcttgga
ttactacagaaggctgtagaaggcttattagatgccacaagtggtgctgatgctgattta
ctgctgcgatacagggaatgccacctgttggtactgaaggctctgcaggatggcagggca
tacggatctccatggtgcaacaaacaaatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtggaggctgtggagttgttaattcgaaatcatttggttaacatgcag
cagtatgatcttcatcttgctcagtcgatggagaatggcttgaactacatggctgtggcg
tttgctatgcagttggtaaaaatcctgctggtggatgaaaggagtgttgcccatatcact
gaggcagatctgttccatactattgaaaccctcatgagaattaatgctcattccagaggc
aatgctccagaaggattgccccagctgatggaagtagtgagatccaactatgaagcaatg
attgaccgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctataccattcagcagcagctggccgtgacagtaccaaagcattctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccaacaaggaatacttaaaactgatgac
ctcataacaaggttttttcgtctttgcactgaaatgtgtgttgaaatcagttaccgtgct
caggcagagcagcagcacaatcctgctgctaaccctaccatgattcgggccaagtgctac
cacaacctggacgcctttgtccgcctcatcgcactattagtgaagcactctggggaggcc
accaacaccgtcaccaagatcaacctgctcaacaaggttctcggtatagtagtgggagtt
ctcctgcaggaccatgatgtgcggcagagtgaatttcagcagcttccctaccaccggatt
tttatcatgctgctgttggagctcaatgctcctgagcatgtgttggagaccattaatttc
cagactctgactgctttctgcaatacattccacatcttgaggcctactaaagctcctggc
tttgtatatgcttggcttgaattgatctcccatcggatctttattgcaagaatgctggca
catacgccacagcagaaggggtggcctatgtatgcacagctgttgattgatttattcaaa
tatttagcacctttccttagaaatgtggaactcactaaacctatgcaaatcctctacaag
ggtactctaagagtgctgctagttcttttgcatgatttcccagagttcctttgtgattac
cattatgggttctgtgatgtgatccctcctaattgtatccagttaagaaatttgatcctg
agtgccttcccaagaaatatgaggctcccagacccattcactcctaatctgaaggtggac
atgttaagcgaaattaacattgcccctcggatcctcaccaatttcactggagtgatgcca
ccccagttcaaaaaagatttggattcttatcttaaaactcgatcacccgtcacttttctg
tctgatctgcgtagtaacctccaggtctctaatgagcctgggaaccgctacaacctccag
cttatcaatgcattggtgctctatgtagggactcaggccatcgcacacatccacaacaag
ggcagcacgccctcaatgagcaccatcacccactcagcacacatggacatcttccagaac
ctggccgtggacctagatactgagggccggtatctcttcttaaatgcaattgcaaaccag
ctgcggtaccccaatagccacacccactacttcagctgcaccatgctctacctgtttgcc
gaggcgaacaccgaagcaatccaggaacagatcacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttatcaccttcattgagctgattaaaaatcca
gcatttaagttctggaaccatgaatttgtacactgtgccccagagattgaaaagttgttt
caatctgttgcacagtgctgcatgggacagaagcaggctcagcaggtgatggaggggacc
ggtgccagttag
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integrated database retrieval system
