Apodemus sylvaticus (European woodmouse): 127672003
Help
Entry
127672003 CDS
T10613
Symbol
Nlrc5
Name
(RefSeq) protein NLRC5
KO
K22615
NLR family CARD domain containing 5
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
asyl04054
]
127672003 (Nlrc5)
Pattern recognition receptors [BR:
asyl04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127672003 (Nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Atypical_Card
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
NOD2_WH
NPHP3_N
AAA_16
nSTAND3
AAA_25
AAA
LRR_Zer-1
AAA_22
Motif
Other DBs
NCBI-GeneID:
127672003
NCBI-ProteinID:
XP_052023105
LinkDB
All DBs
Position
21:complement(35933191..36018369)
Genome browser
AA seq
1834 aa
AA seq
DB search
MDSESFRLGNENLWARLVRLLSKHPEWLSAKVRFFLPTLDLDCSHEAPNPEVTHRQLNRL
FAHGLATWESFISTLCIELDVPLELEVPLLSIWGQREEFSKQLGAGEENCAGPQLHHGVK
RPFQSYGSSPRRKNSKKQQLELAKKYLNLLKISAQQRHGGSCPGAWHTLDSPQNYIPPIL
QWSRATAPLDAQEGATLGEPEAADDIDVSIQDLFSFKAHKGPRVTVLLGKAGMGKTTLAY
RLLWRWAHGQLDCFQALFLFEFRQLNMITRLLTLPQLLFDLYLSPESEPDAVFQYLKENA
HQVLLIFDGLDEALHADSMGTDNAGSALTLFSDLCHGNLLPGCWVMTTSRPGKLPSCVPT
EAAMVYMWGFDGLRVEKYVTHFFSDILSQELALKEMRTNERLRGMCAIPALCRVICFCLR
RLLPESSPGQSAALLPTITQLYLQMVKTFSPSRTLLETSLLGLGKVAFSGLNTGKVIFSV
EDISPKLMAFGAVHSLLTSFCIHTQPGHEEIGYTFVHLSLQEFFAALYLMASDTVDKDTL
IEYVTLNSHWVLRTKGRLGLSDHLPTFLAGLSSHTCQAYLCHLAQQDKAWVGSRQAAVIQ
VLRKLASRKLTGPKMIELYHCVAETQDLELARFTAQSLPFHLAFHNFPLTRADLAALANI
LEHRDGPIYLDFDGCPLEPHCPEALVGCGQVENLSFKSRKCGDAFAEALCKSLPTMGSLK
TLGLTGSKITAQGISHLLQALPLCSQLEEVSLSDNQLKDPEVLSLVELLPSLPKLQKLDL
SRNSFSMSILLPLVKVAITYPTVRRLQVRESDLIFFLSPVTKTTTQQSGPSDVLGKDSLK
EGQSQSLQLRLQKCQLSVRDAEALVELLQKGPRLEEVDLSGNHLEDEGCRLLAQAALHIS
RKLDLSDNGLSQTGVAYVLKAMSACGTLEELHISLVSNTVVLTFSQDPSEQEGSCKRRPP
LTSFMSPVTSELSQRSRRIRLTHCGFLAKHTEKLCEALRASCQSHHLDHLDLSDNSLGDK
GVILLTQLLPGLGPLKSLNLSRNGLSMDAVFSLVLCMSSLQWVFHLDVSLESDCIFLRGA
GTSRDALAGGPEFLAGAQLLELSQRPTSRSFCLQECQLEPLSLAYLCATLEKCPGPLEVQ
LSCKSLSDESLKTLLLCLPQLPQLSLLQLSHTVLSSRSPFLLADVFNLCPRVQKVNLRSL
CHAALHFNSNEEQESVCCGFPECSLSQEHMETLCCALSKCTTLSQLDLTANLLDDSGLRY
LLECLPPLPISGWLDLSHNNISQEGILYLLETLPSYPHIQEASVSLGSEQIFRIRFSEEE
GAGTTLRLCECSFSPEQVSRLASSLSQAQQLTELWLTRCHLDLPQLTALLNLVNRPAGLL
GLRLEESWVGSVSLAALMEVCAQASGCLTELSVSETQRKLWLRLEFPHQEDNSAAMALRL
AHCDLGTDHSHLMRQLVETCARLQQLSLCQVSFSDDDNGTRSRLLQKVLLSSCELKSFRL
TFSQVSTESLAHLASGLRHCHHLEELEFSNNSVCEEHTELLTGALQGTCRLKRLHLSHLP
LEASSLASLIQGLCRLTLLQDLCLSHNQIGDVGTQHLAAILPRLPELRKLDLSGNRIGPA
GGVRLVKTLTYFEHLEEIILGNNALGDPTALGLAQKLPPQLRVLCLPSSHLGPEGTLCLA
QALEQCPHIEEVSLAENNLSGGVPHFSRRFPLLRHIDLVSCKIKDQAAKNLATTFMLCPA
LEKILLSWNLLGDEVAAELAQVLPQMGQLKRVDLEKNRITACGAQLLARGLVQGSCVPVI
RLWNNPIPAEVAQSLQSQEPRLDFSFFEQQPQTL
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggactccgagagcttccgactgggcaatgagaacctgtgggcccggcttgtgagactg
ctgagcaaacacccagaatggctgagtgccaaggttaggttcttcctccctaccttggac
ctggactgcagccatgaggcccccaaccccgaggtcactcaccgtcagctcaacaggctg
ttcgcccatggcctggccacctgggagtccttcatctctactctgtgcatcgagctggat
gtgcctctggagctggaggtaccactcctgagcatctggggccaaagagaggagttctct
aagcagctaggagcaggtgaagagaactgtgctggacctcagctgcaccatggtgtcaaa
cgtccttttcagagctatgggtcctcaccccgtcggaagaacagcaagaagcagcagcta
gagttggccaagaagtatctgaacctcctgaagatctctgcccaacagcgtcatggtggt
tcatgcccgggggcatggcatactcttgactccccacagaactatatccccccaattctt
cagtggagcagggctacagcacctttggatgctcaagagggagccactctaggagagccc
gaagcagctgatgacattgatgtgagcatccaggatctcttcagcttcaaggcccacaag
gggcctcgagtgacagtactactgggaaaggctgggatgggtaagaccactctggcatat
cggctcctctggaggtgggctcacggtcagctggactgcttccaggctctgttcctgttt
gagttccgccagctcaacatgatcacacggttgctgacactgccccagctcctctttgat
ctgtacttgagcccggagtcagagcctgatgctgttttccagtacctaaaggagaacgct
catcaagtcctactgatctttgatggattggatgaagctctccacgccgattccatgggc
actgacaatgcaggctcggccctcaccctcttttctgacctctgccatgggaacctcctt
ccaggctgctgggtgatgactacctctcgtcctgggaaactgccttcctgtgtgcccaca
gaggcagccatggtgtacatgtggggctttgatgggctgcgggtagagaagtatgttacc
cacttcttcagcgatattctgtctcaggaattggccttgaaagaaatgagaaccaatgaa
cgtctccggggtatgtgtgcaatacctgcgttgtgcagagtcatctgcttctgcctccgc
cgtttgcttcctgaaagctctccagggcagtctgcagccctcctgcccaccataacccaa
ttgtacctgcagatggtgaaaacttttagccccagcaggactctgcttgaaacatccttg
ttgggccttggaaaagtggcctttagtggactgaacactgggaaggtcatcttctctgtg
gaagacatctctcccaaactgatggcttttggagctgtccacagcctcctgacctccttc
tgtatccatacccagcctgggcatgaagaaataggctatacatttgtacacctcagcctg
caggagttctttgctgctctgtatttgatggccagtgacacagtggacaaagacacactc
atcgagtatgtcaccctcaattcccactgggtgctgaggaccaaaggtagactgggtctc
tcggaccatctccctaccttcctggcaggcctgagctcccacacctgccaagcatacctc
tgccacctggctcagcaagataaagcctgggtgggctccaggcaggccgctgttatccag
gtactgaggaagttggctagccgaaagctcacgggaccaaagatgatagaattgtaccac
tgtgtggctgagacccaggatctggagttggcgaggttcactgcacaaagccttcccttc
catctcgccttccacaatttccctctgacccgtgcagacctggctgcactggccaacatt
ttggagcacagggatggccccatttacctggattttgacggctgcccactggagccccac
tgcccagaggctctggtaggatgtgggcaggtggagaatctcagctttaaaagcagaaag
tgtggggatgcctttgcagaagccctgtgcaagagcttgcctactatggggagcctgaag
acgctggggttaacaggaagtaagattacagcccaaggcatcagccaccttctacaggct
ttgcccctctgttctcagctggaggaggtcagtttgagtgacaaccagctcaaggaccca
gaggtgctgagtcttgtggagctgctcccttccctgccgaaactccagaaacttgacctg
agccgaaacagcttttccatgtcaatcctcctgcccttggtgaaggtggccatcacgtat
cctactgtccggaggctgcaggtcagggaatcggacctcatcttctttctgtccccggtc
acaaagaccactacacagcagtcaggaccatcagatgtactaggcaaagacagcctgaag
gaaggacagagtcaaagcctgcaactcaggcttcagaaatgtcagctcagtgtccgtgat
gcagaagcccttgtggagctgctccagaaaggcccccggctagaggaagtggatctttca
gggaaccatctggaagacgaaggctgtcggcttctggcacaggctgcgcttcacatttcc
cggaaactggacctcagtgacaatggcctctctcagaccggggtggcctatgtcctgaaa
gccatgagcgcgtgtgggacgctggaagagctgcacatcagcctggtaagcaacactgtg
gtactcacattttcccaggacccgagcgagcaggaggggagctgcaagaggaggccacca
ctgaccagcttcatgtctcctgtgacctccgagttgtcccagagatctcgaaggatcagg
ctgacacactgtggcttcctggccaagcacacagagaagctctgtgaagcactgagagcc
agctgccagtcccaccacctggatcatctcgacctatcagacaactctttgggggacaaa
ggagtgatcctactaacccagctcctcccaggactgggtcccctgaagtccttgaacctc
agcaggaatggcttgtccatggatgctgtgtttagcttggtcctgtgtatgtcttccctg
cagtgggtgttccacttagatgtcagccttgagagtgactgcatcttccttcgaggagct
gggaccagcagggatgcactagctggtggaccagaattcctggctggagcccagttactg
gagttgagtcagcggcccacctccaggagcttctgccttcaggagtgtcagctggaaccc
ctgagccttgcctacctctgtgccactctggagaagtgcccagggcctctggaagtccaa
ttgtcctgcaagtcgctgagtgacgagagcctgaagaccctgctgctgtgcctgccccag
ctgcctcagctcagcctgctgcagctgagccacacagtcctgtcttcaagaagccctttt
ctgctggctgatgtcttcaacctgtgcccacgggttcagaaggtcaatctcaggtcccta
tgccatgctgctctgcactttaactctaacgaggaacaagagagcgtgtgctgtgggttc
ccagagtgcagcctcagccaggagcatatggaaacactgtgttgtgcactgagcaagtgc
acaaccctcagccagcttgacctcacagccaacctgctggatgacagtgggctcaggtac
cttctggagtgcctgccaccgctgcccatctctggatggctggacctcagtcacaacaat
atctctcaagaagggatcctctacctgctggaaactctgccttcctaccctcatatccaa
gaggcctctgtaagtctgggatctgagcagatcttccggatacgcttctctgaagaggaa
ggagctgggacaacactgaggctatgtgaatgcagcttcagccctgaacaagtatccaga
ttggcttccagcctgagccaggcccaacagctgacagagctctggctgaccaggtgtcac
ttggacctgccacagctgactgcgctcctgaacctggtgaatcggccagcagggttactg
ggcctcaggttggaagagtcctgggtgggctctgtcagcttagcagctctaatggaagtc
tgtgcccaggcctcaggatgtctcactgagttaagcgtctctgagacccaaaggaagctg
tggctccggctggaattccctcaccaagaagacaattctgcggccatggctctgaggttg
gctcactgtgacctggggaccgaccacagccatcttatgagacagttggtggagacatgt
gccagactgcagcagctgagcttgtgtcaggttagcttcagtgacgacgacaatggcacc
agatccaggctgctgcagaaggtcctgctatcaagctgtgagctgaagagcttccgcctg
accttcagccaagtgagcacagagagccttgcccacctggcatctggtctgagacactgc
caccatctggaagagctggagttctctaacaacagtgtctgtgaggagcacacagagcta
ctgacaggagcccttcagggaacctgcagactgaagaggctgcacctcagtcacttgcca
ctggaagcctcctctctggcctcgctcattcaagggctatgccgcctgaccctgctgcag
gacctttgcctgagtcacaaccagatcggagacgtgggtacccagcacttagctgccatc
ttgccaagactgccagaactcaggaaattagacctgtcagggaacaggattggcccagct
gggggagtgcggctggtcaagactctcacctatttcgagcacttggaggagatcatactg
ggcaacaatgctctgggggatcccacagccctggggctggctcagaaattgcccccacaa
ctccgggtcctgtgcctgccatccagccatctgggtccagaggggaccctgtgcctggcc
caggccctggagcaatgcccacacatagaagaagtcagcttggcggagaataacctgtct
ggaggtgtcccacatttctccaggaggttcccactgcttagacacattgacctggtgtcc
tgcaagattaaagaccaagctgccaagaaccttgccaccaccttcatgctctgcccagcc
ctggaaaaaatcttgctgtcctggaatctccttggtgatgaggtggctgccgagttggcc
caggtcctgcctcagatggggcagctgaagagagtggacttggagaagaaccggatcaca
gcatgtggagcccaactcctggctcgggggctggtccagggatcctgtgtcccagtcatt
cgcctctggaacaaccccattcctgctgaagtggcccagagtctacagagccaggaaccc
agactggacttctccttctttgagcagcagccccagactctttga
DBGET
integrated database retrieval system
