Apodemus sylvaticus (European woodmouse): 127672747
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Entry
127672747 CDS
T10613
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127672747 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127672747 (Xab2)
03041 Spliceosome [BR:
asyl03041
]
127672747 (Xab2)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
127672747 (Xab2)
Spliceosome [BR:
asyl03041
]
Complex B
Other components
Prp19-related factors
127672747 (Xab2)
Complex C
127672747 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
TPR_12
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_MalT
TPR_1
TPR_21
TPR_16
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
127672747
NCBI-ProteinID:
XP_052024050
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Position
22:complement(19416085..19428063)
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AA seq
855 aa
AA seq
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MVVMARVPCPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgagttccgtgtccggagcggccggatcttgtttttgaggaagag
gaccttccctatgaggaagaaatcatgaggaaccagttctctgtcaaatgctggctccgc
tacatcgagttcaaacagggagcccccaaacctcgactcaaccagttgtacgagcgggca
ctcaaactgcttccctgcagctacaagctctggtaccgctatctgaaggcacgccgggcg
caggtgaaacatcgctgtgtgactgacccagcctatgaagatgtcaacaactgccatgag
agggcctttgtgttcatgcacaagatgccacgcctgtggttagactactgccagtttctc
atggatcagggaagagtaacacacacccgccgcacctttgaccgcgccctcagggcactg
cccatcacacagcactctcgcatctggcccctgtatctgcgtttcctgcgctcccaccca
ctgcctgagactgctgtgcgaggttaccgtcgcttcctcaagctgagtcctgagagtgcc
gaggagtacatcgagtatctcaaatccagcgaccggctggacgaggctgcccagcgcctg
gccactgtggtgaatgatgaacgcttcgtttccaaggctggtaaatccaactaccagctg
tggcacgagctgtgtgaccttatctcccagaatccggacaaagtgcagtctctcaatgtg
gatgccataatccgtggtgggctcacccgcttcactgaccagctggggaagctgtggtgc
tccctggcagactactatatccgcagtggccacttcgaaaaggcacgcgacgtgtatgag
gaggccatccgcactgtgatgactgtgcgggacttcacccaggtgttcgacagctatgcc
caatttgaggagagcatgattgcagcgaagatggagactgcctctgaactggggcgagag
gaggaggatgatgtggacctggagctgcgcctggcccgcttcgagcagctcattagccga
cggcccctgctcctcaacagcgtccttctgcgccagaacccacaccacgtccacgagtgg
cacaagcgtgtagccctgcatcagggccgccctcgagagattatcaacacatacacagag
gctgtgcagactgtagaccccttcaaagccacgggcaagccccacacactatgggtcgcc
tttgccaagttttatgaagataacggacagctggatgatgctcgggtcatcctagagaag
gccaccaaggtgaacttcaagcaggtggacgacctggcgagtgtgtggtgccagtgcggg
gaactggagctccggcatgagaattacgacgaggctttaaagctgcttcgaaaagccacg
gctctgcctgcccgccgggccgagtacttcgatggctcagagcctgtgcagaaccgagtg
tacaagtcgctgaaggtgtggtccatgcttgccgacttggaggagagcctgggcactttc
cagtcaaccaaggctgtgtacgaccgaatcctggacctgcgcatagccacgccacagatt
gtcattaactacgccatgttcctggaggagcacaagtattttgaggagagcttcaaggcg
tatgagcgtggcatctcactgttcaagtggcccaatgtttcagacatctggagcacctac
ctgaccaaattcatctcacgctatgggggccgcaagctggagcgtgcgcgggatctcttt
gagcaggcactagatggctgcccaccaaaatatgccaagactttatacctgctttacgca
cagctggaggaggagtggggcctggcccgccacgccatggctgtgtatgaccgagccacc
agggcggtggagcccgcccagcagtatgacatgttcaacatctacatcaagcgggctgct
gagatctacggcgtcacccacactcgcggcatctaccagaaggccatcgaggtgctatct
gatgagcacgcccgcgagatgtgcctgcggttcgcagacatggaatgcaagctgggggag
atcgaccgcgcccgcgctatctacagcttctgctcccagatctgtgatccccggacaact
ggggcattctggcaaacatggaaggacttcgaggtccggcacggcaatgaggataccatc
agggagatgctgaggatacggcggagtgtacaggccacatacaatactcaggtcaacttc
atggcttcgcagatgctcaaggtgtcgggcagtgccacaggcaccgtgtctgacctggct
cctgggcagagcggcatggatgacatgaagctgctagaacagagagcggagcagctagcg
gccgaggcggagcgggaccagccccccagggcccagagcaagatcttctttgtgaggagt
gatgcatccagggaggaattggcagagctggctcagcaggccaaccctgaggagatccag
ctgggcgaggatgaggacgaggacgagatggacctggagcccaatgaagtccggctggaa
cagcagagtgtgcccgctgccgtgttcgggagcctaaaggaagactga
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