Apodemus sylvaticus (European woodmouse): 127672788
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Entry
127672788 CDS
T10613
Symbol
Atxn2
Name
(RefSeq) ataxin-2 isoform X1
KO
K23625
ataxin 2/2L
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl05014
Amyotrophic lateral sclerosis
asyl05017
Spinocerebellar ataxia
asyl05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127672788 (Atxn2)
05017 Spinocerebellar ataxia
127672788 (Atxn2)
05022 Pathways of neurodegeneration - multiple diseases
127672788 (Atxn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127672788 (Atxn2)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127672788 (Atxn2)
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Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
LSM
Motif
Other DBs
NCBI-GeneID:
127672788
NCBI-ProteinID:
XP_052024108
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Position
22:complement(47318753..47415647)
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AA seq
1285 aa
AA seq
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MRPSAAAAQRPAAGPEPRRPPGWAARRSLPRTARRGGRGGAVAYPSAGPPPRGPGAPPRG
PRSPPCASDCFGSNGNGASRPGSRRLFGVCGPPRPFVVVLLPLAPATAPPRACPLSVRAS
PPRSGVSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPASGRKPGGGLLSSPGAAPAS
AASTSSSVVPAPAAPVASSSAAAGGGRPGLGRGRNSSKGLPQPTISFDGIYANVRMVHIL
TSVVGSKCEVQVKNGGIYEGVFKTYSPKCDLVLDAAHEKSTESSSGPKREEIMESVLFKC
SDFVVVQFKDTDSSYARRDAFTDSALSAKVNGEHKEKDLEPWDAGELTASEELEALENDV
SNGWDPNDMFRYNEENYGVVSTYDSSLSSYTVPLERDNSEEFLKREARANQLAEEIESSA
QYKARVALENDDRSEEEKYTAVQRNCSDRDGHGTNTRENKYIPPGQRNREVISWGSGRQS
SPRMGQPGPGSVPSRAASHSADFNPNAGADQRVVNGGVPWPSPCPSPSSRPPSRYQSGPN
SLPPRAATPTRPPSRPPSRPSRPPSHPSAHGSPAPVATVPKRMSSEGPPRMSPKAQRHPR
NHRVSTGRGSMSSGLEFVSHNPPSETVAPPVARTSPAGGTWSSVVSGVPRLSPKTHRPRS
PRQNSTGNSPSGPVLASPQAGIIPADAVSMPVPAASPTPASPASNRALTPSIEAKDSRLQ
DQRQNSPAGNKENIKASETSPSFSKAENKGMSPVVSDHRKQIDDLKKFKNDFRLQPSSTS
ESMDQLLSKNREGEKSRDLVKDKTEASAKDGFIDNSSSSSNCTSGSSKTNSPSISPSVLS
NAEHKRGPEVTSQGVQTSSPACKQEKDDREEKKDTTEQVRKSTLNPNAKEFNPRSFSQPK
PSTTPTSPRPQAQASPSMVGHQQPAPVYTQPVCFAPNMMYPVPVSPGVQPLYPIPMTPMP
VSQAKTYRAGKVPNMPQQRQDQHHQSTMMHPASAAGPPIVATPPAYSTQYVAYSPQQFPN
QPLVQHVPHYQSQHPHVYSPVIQGSARMMAPPTHAQPGLVSSSAAQFGAHEQTHAMYACP
KLPYNKETSPSFYFAISTGSLAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAP
SPVQHHQHQAAQALHLASPQQQSAIYHAGLAPTPPSMTPASNTQSPQSSFPAAQQTVFTI
HPSHVQPAYTTPPHMAHVPQAHVQSGMVPSHPTAHAPMMLMTTQPPGGPQAALAQSALQP
IPVSTTAHFPYMTHPSVQAHHQQQL
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgtcggccgccgccgctcagcggcccgcggcaggccccgagccgcgccgccca
ccgggctgggccgcgcggcgctcgctcccgcggacggcgcggcgcggcgggcggggcggc
gcggtggcatatccctccgccggccctcccccgcgcggccccggcgcccctccccgcggg
ccgcgctcgccgccctgcgcctcagactgttttggtagcaacggcaacggcgcgtcccgg
cccggctcccggcggctgttcggtgtctgcgggcctccccgccccttcgtcgtcgtcctg
ctgcctctggctcccgcgaccgcgccaccccgcgcctgcccgctcagcgtccgcgcgtcc
ccgccgcgctccggcgtctcctcagcgcgcccggctcccggctgtccccgcccggcgtgc
gagccggtgtatgggccgctcaccatgtcgctgaagccgcagccgcagccacccgcgccc
gccagtggccgcaagcccggcggcggcctgctctcgtcgcccggcgccgcgccggcctcg
gccgcgtcgacttcgtcttccgtggtgccggccccggccgcgccggtggcgtcttcctcg
gcggccgcgggcggcgggcgtcccggcctgggcagaggtcggaacagtagcaaaggactg
cctcaacctacgatttcttttgacggaatctatgcaaacgtgaggatggttcatatactt
acgtcagttgttggatcgaaatgtgaagtacaagtgaaaaatggaggcatatatgaagga
gtttttaaaacatacagtcctaagtgtgatttggtacttgatgctgcacatgagaaaagt
acagaatccagttcggggccaaaacgtgaagaaataatggagagtgttttgttcaaatgc
tctgacttcgttgtggtacagtttaaagatacagactccagctatgcacggagagatgct
tttactgactctgctctcagcgctaaagtgaatggcgagcacaaggagaaggacctggag
ccctgggatgcaggggagctcacggccagcgaggagctggaggctctggagaatgatgtg
tctaatggatgggaccccaatgatatgttccgatataatgaagagaattacggtgtggtg
tccacatacgatagcagtttatcttcatatacggttcccttagaaagggacaactcagaa
gaatttctgaaacgggaggcaagggcaaaccagttagcagaagaaattgaatccagtgct
cagtacaaagctcgtgtggcccttgagaacgatgaccggagtgaggaagaaaaatacaca
gcagtccagagaaactgcagtgaccgggatggccacggcaccaacactagggaaaataaa
tatattcctcctggacaaagaaacagagaagtcatatcctggggaagtgggagacagagc
tcaccacggatgggccagcctggaccaggctctgtgccatcgagagctgcttctcactct
gcagatttcaacccgaatgctggcgcagaccaaagagtagttaatggaggtgttccctgg
ccatcgccctgcccatctccttcctctcgcccaccttctcgctaccagtcaggtcccaac
tctcttccacctcgggcagccacccctacacggccgccctccaggcccccctcgaggccc
tccagacccccgtctcacccctctgctcatggttctccagctcctgtcgctactgtgcct
aaacgcatgtcttcagaaggccctccaaggatgtctccaaaggcacagcggcaccctcgg
aatcacagagtctccactgggagaggctccatgtctagtggcctagaatttgtatcccac
aatcccccaagtgaaactgttgctcctccagtggcaaggaccagtcctgcagggggaacg
tggtcctcagtggtcagtggggttccaaggttatctcccaaaactcacagacccaggtct
cctaggcagaacagcactggaaactctcccagcgggcctgtgctggcttctccccaagct
ggcatcatccctgctgacgccgtttccatgcctgttcccgccgcatctccaactcctgcc
agccctgcgtccaacagagccctgaccccatctattgaggcaaaagattccaggcttcaa
gatcagaggcagaactctcctgcagggaataaagaaaatattaaagcaagtgaaacatca
cctagcttttcaaaagctgaaaacaaaggtatgtcaccagttgtttctgaccacagaaaa
cagattgatgatttaaagaagtttaagaatgattttaggttacagccaagttctacatct
gaatctatggatcaactcctaagcaaaaatagagaaggagaaaagtcacgagatttggtc
aaagataaaacggaagcaagtgctaaggatggtttcattgacaacagcagcagcagcagc
aactgcaccagtggcagcagcaagaccaacagccccagcatctccccttccgtgctcagt
aatgcagagcacaagagggggccggaggtcacctcccaaggggtgcagacttccagtcca
gcctgcaaacaagagaaggatgacagagaggagaagaaggacacaacggagcaagttagg
aagtcgacattgaatcccaatgcaaaggagttcaaccctcgctctttctctcagccaaag
ccttctactaccccaacttcccctcggcctcaggcacaagccagcccatccatggtgggt
catcagcagccagctccagtgtacacccagcctgtgtgttttgcacccaacatgatgtat
cctgtccccgtgagcccgggcgtgcaacctttatacccaatacctatgacgcccatgcca
gtgagccaagccaagacctacagagcaggtaaagtaccaaatatgccccaacagcgacaa
gaccagcatcatcaaagcaccatgatgcaccctgcctctgctgcagggccgcccatcgta
gccaccccgcccgcctactccactcagtatgttgcctacagccctcagcagtttcccaat
caacctctggtccagcatgtgccgcattatcagtctcagcatcctcatgtgtacagtcct
gtcatacaaggtagtgccaggatgatggcaccaccaacacatgctcagccgggtttagtg
tcttcttcagccgctcaattcggggctcacgagcagacgcacgcgatgtatgcatgtccc
aaattaccatacaacaaggagacaagcccttctttctactttgccatttccaccggctcc
ctcgctcagcagtatgcacatcctaatgccaccctgcatccacatactccccatcctcag
ccttcggccactcccactggacaacaacaaagccagcatggtggaagtcatcctgcaccc
agtcctgttcagcaccatcagcaccaggccgcccaggctcttcatctggccagtccacag
cagcagtcggctatttatcatgcggggctggcaccaacaccaccttccatgactcctgcc
tctaatacacagtctccacagagcagtttcccagcagcacaacagacagtcttcaccatc
catccttctcatgttcagccggcatacactaccccaccccacatggcccacgtacctcag
gctcatgtacagtcaggaatggttccttctcatccaactgcccatgcgccaatgatgcta
atgacgacacagccacccggcggtccccaggccgccctcgctcaaagtgcactacagccc
attccagtctcgacaacagcgcatttcccttatatgacgcacccttcagtacaagcccac
caccaacagcagttgtaa
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