Apodemus sylvaticus (European woodmouse): 127673641
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Entry
127673641 CDS
T10613
Symbol
Smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127673641 (Smg9)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127673641 (Smg9)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
DUF6079_1st
AAA_30
Motif
Other DBs
NCBI-GeneID:
127673641
NCBI-ProteinID:
XP_052025366
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Position
1:complement(189934445..189956307)
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AA seq
520 aa
AA seq
DB search
MSESGHSQPGLYGIERRRRWKEPGSSGPQNLSGPGGRERDYIAPWERERRDGSEDPSTNV
MQKTPIILSKPPAERSKQPPPSTAPAAPPAPAPLEKPIVLMKPREEGKGPVAGTGASTPE
GTAPPPPTAPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPTAMDPVVGQAKLLPPERMKHS
IKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRA
QSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYSLPHTYV
EMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSAGSDEG
TEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCNVFPGLPPD
FLDAEVNLFLVPFMDSEAENENPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSM
ARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtccgggcacagccagcctggcctctatgggatagagcgacggcggcggtgg
aaggagccgggctccagtggcccccagaatctgtctgggcctggcggtcgggaaagagac
tacattgccccctgggaaagagagagacgggatggcagcgaagaccccagcactaacgtc
atgcagaaaactcccatcatcctctcaaagcctccagctgagcggtcaaagcagccgcca
cctagcacagcaccagccgcaccgccagccccagccccactggagaaacccattgtgctc
atgaagccccgtgaggaggggaaggggccggtggctgggacgggggcctccacccctgaa
ggtactgccccgccgccccccacggcccccgcaccgcccaaaggagagaaggaggggcag
agacccacacagcccgtgtaccagattcagaaccggggcatgggcactgccgccccaacg
gccatggaccctgtggtgggccaggctaagctcctgcccccagagcgcatgaagcacagc
atcaaactggtagacgaccagatgaactggtgtgacagcgccattgagtacctgctggat
cagacggacgtgctagtggtcggtgtcttgggcctccaggggacaggcaagtccatggtc
atgtcactgctgtcagcaaacactccagaggaggaccagagggcgtatgtcttccgggcg
cagagcgcggagatgaaggagcgagggggcaaccagacgagtggcattgacttcttcatt
acccaagagcggattgtcttcctggacacgcagcccatcctcagcccatccatcctggac
cacctcatcaacaatgaccgcaagctgcctccagagtatagcctccctcatacctatgtg
gaaatgcagtccttgcagatagccgccttcctcttcacggtctgccacgtggtgatcgtc
gtgcaggactggttcacggacctcagtctgtacaggttcctgcaaacggcagagatggtg
aagccgtccaccccgtcccccagccatgagtccagcagctcagcaggctcggatgagggc
accgagtactacccccacctcgtcttcctgcagaacaaggcgcgcagggaggacttctgt
ccacggaagttgcgtcagatgcacctgatgattgaccagctcatggctcactcccacctg
cgctacaaggggacgctgtccatgctacaatgcaacgtcttcccggggctgccgcccgac
ttcctggacgctgaggtcaacctgttcctggtgcccttcatggacagtgaagctgagaac
gagaacccacctcgagcagggcctggctccagccccctcttctccctgctgcctgggtac
cgaggtcaccccagcttccagtccttggtcagcaagctccgcagccaggtgatgtccatg
gctcggccgcagctgtcgcacacaatcctcactgagaagaactggttccactatgctgcc
cgaatctgggatggggtgaagaagtcctcagccctggcagagtacagccgcctgctggcc
tga
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