Apodemus sylvaticus (European woodmouse): 127674964
Help
Entry
127674964 CDS
T10613
Symbol
Lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03030
DNA replication
asyl03410
Base excision repair
asyl03420
Nucleotide excision repair
asyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127674964 (Lig1)
03410 Base excision repair
127674964 (Lig1)
03420 Nucleotide excision repair
127674964 (Lig1)
03430 Mismatch repair
127674964 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asyl03032
]
127674964 (Lig1)
03400 DNA repair and recombination proteins [BR:
asyl03400
]
127674964 (Lig1)
Enzymes [BR:
asyl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
127674964 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
127674964 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
127674964 (Lig1)
DNA replication proteins [BR:
asyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
127674964 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
127674964 (Lig1)
DNA repair and recombination proteins [BR:
asyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
127674964 (Lig1)
NER (nucleotide excision repair)
Other NER factors
127674964 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
127674964 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
127674964
NCBI-ProteinID:
XP_052026790
LinkDB
All DBs
Position
1:complement(199433433..199479174)
Genome browser
AA seq
938 aa
AA seq
DB search
MGKKEQERKGETSAANMQRSIMSFFQPTKEGKAKKSEKETPSSIREKEPPPKVALKERSR
VVPENDSPVKRLGRKVAQVLSSEGEDEDEDPGITKGQKESVSDSEESSPPSPDTCPENST
FFNRSPSMDISPSGFPKRRTARKQLPKRKIQDTLEEQNEDKDKATAKKRKKEEEETPTES
LTEAEEVKQKEEKEGDLPLVPPEPTKSHESITLTETENTPVCKAGVKQKPQEEEQSKPAR
GAKTLSSFFTPRKPAVKTEVKQEESGTLRKEETKGILDPTNYNPSKNNYHPIEDACWKHG
QKVPFLAVARTFEKIEEVSARLKMVETLSNLLRSVVALSPPDLLPVLYLSLSRLGPPQQG
LELGVGDGVLLKAVAQATGRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTVSGV
FTKFCDIARLTGSASMSKKMDIIKSLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALA
QAVSLTPPGQEFPTAVVDAGKGKTAEARKMWLEEQGMILKQTYCEVPDLDRIIPVLLEHG
LERLPQHCKLSPGVPLKPMLAHPTRGVREVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEV
KIFSRNQEDNTGKYPDIISRIPKIKHPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRK
EVDASEIQVQVCLYAFDLLYLNGESLVRQPLSRRRQLLRENFVETEGEFVFTTSLDTKDV
EQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGA
YLGRGKRAGRYGGFLLAAYDEESEELQAICKLGTGFSDEELEEHHQSMQALVLPTPRPYV
RIDGAVAPDHWLDPSVVWEVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVRKDKQP
EQATTSDQTSQGRPTEPVTKKTHPDEHCGPGFCSLSLY
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaaaagagcaagagaggaaaggagagacttctgctgccaacatgcagagaagt
attatgtctttttttcaacccacaaaagaaggtaaagcaaagaagtcggagaaggagaca
cccagcagcatcagagagaaggaacctcctccaaaggtggcgctgaaggagaggagtcga
gtggtgcctgagaacgactctccagtgaagaggctaggaaggaaggtagcccaggtcctg
agcagtgaaggggaggatgaagatgaagaccctggcatcaccaaaggccaaaaggagtct
gtgtcagactccgaagagagctctcctcccagccctgacacatgtcctgagaacagtact
ttcttcaaccgtagcccttccatggatatctccccatcaggattcccaaagcgtcgaact
gcacggaagcagctccccaaacggaaaatccaagacacccttgaggagcagaatgaggac
aaagacaaagcaactgctaagaaaaggaagaaagaagaagaagagaccccaacagaaagc
ctcacagaggctgaagaggtaaaacagaaggaagaaaaggagggggacctgcccctagta
ccccctgagcccacaaagtcccatgagtcaataaccctgacagagacagagaacactcca
gtatgtaaggcaggtgtgaagcagaagcctcaggaagaggaacagagcaaacctgccaga
ggtgccaagacactgagcagtttcttcacaccccgaaaaccagcagtgaaaactgaagtc
aaacaagaagagtcaggcactctaagaaaggaagagaccaagggaatcctggatccaaca
aattataatccttccaagaacaactaccatcccattgaagatgcctgttggaaacatggc
cagaaggtcccttttcttgctgtggcccggacatttgagaagattgaggaggtttctgct
aggctcaagatggtggagacactaagcaacctgctgcgatccgtggtggccctgtcccct
ccggacttgctccctgttctctacctcagcctcagccgccttgggccacctcagcaggga
ctagagctgggtgttggtgatggtgtcctcctcaaggcagttgcccaggccacaggtcgt
cagctggagtccatccgggctgaggtagctgagaagggggatgtggggctggtggctgag
aacagccgcagcactcagagactcatgctgcctccacctccactcaccgtttctggagtc
tttaccaaattctgtgacattgcccggctcactggcagtgcttccatgtccaagaagatg
gacattatcaagagcctctttgttgcctgccgccactcggaagcccggttcattgccagg
tccctaagtgggcggctgcgtcttgggctggctgagcagtcggtgctggctgcccttgct
caggctgtgagcctcacaccccctggccaagaatttcccacagccgtggtggatgctggg
aagggtaagacagcagaggccagaaagatgtggttggaagaacaaggcatgatcttgaag
cagacctactgtgaggtgcctgacctggatcgaatcatccctgtactgctggagcatggc
ctggaacgtctcccacagcactgcaagctgagcccaggggtcccgcttaaaccaatgctg
gctcatcccactcggggtgtcagagaggtcctgaaacgctttgaggaggtcgacttcacc
tgcgagtataagtacgatgggcagcgggcacagatacatgttctggaaggtggagaagtg
aagatcttcagcaggaaccaggaagacaacacaggaaagtatcctgacattataagccga
atccccaagattaaacacccctcagtcacatctttcattctggacaccgaggctgtggcc
tgggatcgggaaaagaagcagatccagccattccaagtgctcaccacgcgcaagcgcaag
gaggttgatgcatcggagatacaggtgcaagtgtgtctgtatgcttttgacctcctctac
ctcaacggagagtccctggttcgtcagcccctgtctcgacgccggcagctgctccgtgag
aacttcgtggagacagagggtgagtttgtcttcaccacctccttggacaccaaggacgtc
gagcagattgctgagttcttggagcagtcagtgaaggactcctgtgagggcctaatggtg
aagaccttggatgttgatgccacctatgagattgccaagaggtcacacaactggctcaag
ctgaagaaggactaccttgatggtgtgggcgacactctggaccttgtggtgattggtgcc
taccttggccgggggaagcgggctggccggtatgggggcttcctgttggctgcctacgat
gaggagagtgaagagctgcaggccatatgcaagctgggaactggattcagcgatgaggag
ctggaggaacatcaccagagcatgcaggccctggtgttgcctaccccacgcccctatgtg
aggattgatggggcagtggccccagaccactggctggacccaagtgttgtatgggaggtg
aagtgtgctgatctttccctatcccccatctaccctgctgcacggggcctggtggacaaa
gagaaagggatctctcttcgtttccctcggttcattcgtgtccgtaaagacaagcagcca
gagcaggccactaccagtgaccagacttcccagggtcgcccaacagaaccagtcacaaag
aagactcacccagatgagcactgtggcccaggcttttgcagcttaagtctttactaa
DBGET
integrated database retrieval system
