Apodemus sylvaticus (European woodmouse): 127675149
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Entry
127675149 CDS
T10613
Symbol
Hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04613
Neutrophil extracellular trap formation
asyl05014
Amyotrophic lateral sclerosis
asyl05034
Alcoholism
asyl05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
127675149 (Hdac6)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
127675149 (Hdac6)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127675149 (Hdac6)
09165 Substance dependence
05034 Alcoholism
127675149 (Hdac6)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asyl01009
]
127675149 (Hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127675149 (Hdac6)
04131 Membrane trafficking [BR:
asyl04131
]
127675149 (Hdac6)
03036 Chromosome and associated proteins [BR:
asyl03036
]
127675149 (Hdac6)
Enzymes [BR:
asyl01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
127675149 (Hdac6)
Protein phosphatases and associated proteins [BR:
asyl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127675149 (Hdac6)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
127675149 (Hdac6)
Membrane trafficking [BR:
asyl04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
127675149 (Hdac6)
Chromosome and associated proteins [BR:
asyl03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
127675149 (Hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
127675149
NCBI-ProteinID:
XP_052027092
LinkDB
All DBs
Position
X:12460086..12482672
Genome browser
AA seq
1153 aa
AA seq
DB search
MTSTGQDTSTRQRKTRHNPQSPLQDSSATLKRGGKKCAVPHSSPTLVEVKKKGKMKKLSQ
PAEEDLIVGLQRLDLHPETRVPVGTGLVFDEQLNDFHCLWDDSFPENPERLHAIKEQLML
EGLLARCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLAGTYDSVYLHPNSY
SCACLATGSVLRLVDAVMGAEIRNGMAVIRPPGHHAQRSLMDGYCMFNHLAVAARYAQKK
HRIQRILIVDWDVHHGQGIQFIFDQDPSVLYFSIHRYEHGRFWPHLKASNWSTTGFGQGQ
GYTINVPWNQVGMRDADYIAAFLHILLPVAFEFQPQLVLVAAGFDALHGDPKGEMSTTPA
GFAHLTHLLMGLAGGKLILSLEGGYNLHALAKGVSASLHTLLGDPCPMLESPVAPCASAQ
TSISCTLEALEPFWEVLEKSVEPQDEDEGEEDMLEEEEESRWEAAALPMETWPLFQNRTG
LVYDERMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLIIPARPALDAELLTCHSV
EYVERLRATEKMKTRDLHREGANFDSIYICPSTFSCAQLATGSACRLVEAVLSGEVLNGV
AIVRPPGHHAEPDAACGFCFFNSVAVAARHAQAIAGHALRILIVDWDVHHGNGTQHIFED
DPSVLYMSLHRYDRGTFFPMGDEGASSRVGRAAGTGFTVNVPWNGPRMGDADYLAAWHRL
VLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAGGRIILILEGGY
NLASISESMAACTHSLLGDPPPQLTLLRPPQQGALASISEATQVHRKYWRSLRLMKMEDK
EECSSSRLVLKTLSRTASPVSAKGMTTPKGRGPDASPRKATAAFPVKEAALGQAKAKTVQ
AVLAQGQSSEQAAVGTTLDLATSKETVGGAPAEQCASAATAEKLPQQSTSEAGEAGETEP
APPASWANKQTAGAGAGASPLQGATAQQSLKLGVLSPLKLSSEAEEAPVPEEGLLAEAAG
GQDMNSLMLTQGFGDFNAQDVFYAVTPLSWCPHLMAVCPIPAVGLDVSQPCKTCGSLQEN
WVCLTCYQVYCSRYVNGHMVCHHEDSGHPLVLSCVDLSTWCYICQAYVHHEDLQEVKNAA
HQNKFGEDMPHSH
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacctccaccggccaagatacttctaccaggcagcggaagactaggcacaatccccag
tcaccccttcaggactccagcgccaccttgaagcgtggtggcaagaagtgtgctgtacct
cactccagccccactcttgtggaggtaaagaagaaaggcaaaatgaagaagctcagccag
ccagctgaagaagacctaatcgtggggcttcagcgactggatctgcaccctgagacaaga
gtgccagttggtaccggattggtgtttgatgagcagctaaatgacttccactgcctttgg
gatgacagcttccctgagaatcctgagcggctccacgccatcaaagagcagctgatgctg
gaggggctcctggcccgctgtgtgtccttccaggcccggttcgctgagaaggaggagctg
atgttggttcacagcctggaatacattgatctgatggagacaacccagtacatgaatgaa
ggagagcttcgagtgctagcaggcacctatgattccgtttatctgcatccgaactcctat
tcatgtgcctgcctggctacaggctctgtcctcaggctggtagatgcagtcatgggggct
gagattcggaatggcatggctgtcatcaggcctcctggacaccatgctcagcgcagtctt
atggacgggtattgcatgttcaaccacctggctgtggctgcccgttatgcgcagaagaag
caccgtattcagaggattctcattgtggactgggatgtgcaccatggtcaaggaatacag
ttcatcttcgaccaggacccgagtgtcctctatttctccatccaccgctatgagcatggt
cggttctggccacatcttaaggcttctaactggtccactacaggttttggccaaggccaa
ggatataccatcaatgtaccttggaaccaggtggggatgcgggatgctgactacattgct
gctttcctgcacatcctgctgccagttgcctttgagtttcagcctcaactagtcctggtg
gccgctggatttgatgccctccatggagaccccaagggagagatgtccaccactccagca
ggatttgcccacttaacgcatttgctcatgggtttggcaggaggcaagttgattctatct
ctggagggcggctataacctccatgccctggctaagggtgtcagcgcttcactccacacc
cttcttggagacccttgccccatgttggagtcccctgtggcaccttgtgcaagcgcccag
acttctatctcctgcactctagaggcccttgaacccttctgggaagtcctcgagaagtca
gttgagccccaggacgaagatgaaggagaagaagacatgctagaagaagaggaggaaagc
cgctgggaggcagctgctctgccaatggagacgtggccactgttccagaaccgcactggc
ctggtctatgacgaaaggatgatgagtcactgcaacctatgggacaatcatcaccctgag
acaccgcagcgcatcttacgcatcatgtgtcacctggaggaggtgggcctagcggcccgc
tgtctcatcatacctgctaggcctgccttggatgctgagctccttacctgccacagtgtt
gagtacgtggagcgtctccgggccacagaaaagatgaaaacccgggatctgcaccgggaa
ggcgccaacttcgactcaatctacatctgccccagcactttctcctgcgcgcagctcgcc
acgggctctgcctgccgtctggtggaagcagtgctttcgggagaggttttgaatggcgtg
gccatagtgcgccctccaggacaccatgccgagccagatgctgcttgcgggttctgcttt
ttcaattcagtcgctgtggctgctcgccatgcccaggccattgctgggcatgccctgcgg
atcctaattgtggattgggatgtgcatcacggtaatggaactcagcacatattcgaggat
gaccccagtgtattatacatgtccctgcaccggtatgaccgcggcactttcttccccatg
ggggatgagggcgccagtagccgagtaggccgagcggcagggactggcttcactgtcaac
gtgccctggaatgggccccgcatgggcgatgctgattacctggctgcctggcatcggctg
gttctgcccatcgcctatgagtttaacccagaactggtgctgatttcagctggctttgat
gctgcacaaggggacccgctggggggctgccaagtgacacctgagggttatgcccacctt
acccacctgctgatgggccttgccggtggccgtattattcttattctagagggtggatac
aatctggcctccatctctgagtccatggctgcctgcacccattctctcctcggagaccca
ccaccccagcttactttgctgcgaccaccgcagcagggagccctggcttcgatcagtgag
gccacccaagtccatcgcaaatactggcgcagtttgcggttgatgaaaatggaagacaag
gaagaatgctctagttctcggctggtcctcaagacgctgtcccgaacggccagtcctgtg
tcagctaagggaatgaccacaccaaagggacggggtcccgatgcaagcccaaggaaggcc
acagcagctttccccgtgaaagaggctgccctgggccaggctaaagcaaagacagttcag
gcggtgcttgctcagggccagtcctcagagcaagctgctgtggggaccacactggacctg
gctacctcaaaggagaccgtgggaggagccccagcggagcagtgtgcctcagcagccact
gctgaaaagttacctcagcagagcacctcagaggccggagaggcgggcgaaacggagcca
gctcctccagcctcctgggcaaacaagcagaccgcaggtgcaggcgctggcgcttcaccc
ctgcaaggagccacagcccagcagtcccttaagctaggggttctcagccctttgaaacta
agcagtgaagcagaggaagcccctgtacccgaggaaggcctgctggcagaagcagctggg
ggtcaggacatgaacagcttgatgctgacacaaggatttggggactttaatgcccaggat
gtattttatgctgtgaccccactctcctggtgtccccatttgatggcagtatgccccatt
cctgcagtaggactagatgtgtcccaaccttgtaagacctgtggatcactccaggagaac
tgggtgtgtctgacttgctatcaggtgtactgcagtcgctatgtcaatggccacatggtc
tgccaccatgaggactctggacacccgctggtcctcagctgtgttgacctgtctacatgg
tgttatatctgtcaggcttatgtccaccatgaggatcttcaagaagtgaagaatgctgcc
caccagaacaagtttggggaggacatgccccattcacactaa
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integrated database retrieval system
