Apodemus sylvaticus (European woodmouse): 127675286
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Entry
127675286 CDS
T10613
Symbol
Pabpc5
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03015
mRNA surveillance pathway
asyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127675286 (Pabpc5)
09123 Folding, sorting and degradation
03018 RNA degradation
127675286 (Pabpc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127675286 (Pabpc5)
03041 Spliceosome [BR:
asyl03041
]
127675286 (Pabpc5)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
127675286 (Pabpc5)
mRNA cycle factors
Stress granule specific factors
127675286 (Pabpc5)
Spliceosome [BR:
asyl03041
]
Complex C
Other components
Complex C specific factors
127675286 (Pabpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_occluded
RRM_10
RRM_3
TC1
Motif
Other DBs
NCBI-GeneID:
127675286
NCBI-ProteinID:
XP_052027317
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All DBs
Position
X:79559184..79560332
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AA seq
382 aa
AA seq
DB search
MGSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTHSPLG
YGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNR
ALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRF
KFPEERAAEVRTRDRATFTNVFVRNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKG
FGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKSRPP
GVPIYIKNLDETINDEKLKEEFSSFGSVSRAKVMMEVGQGKGFGVVCFSSFEEASKAVDE
MNGRIIGSKILHVTLGQARHRW
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtggggagcctaatactgctggcaagaaaaagaagtacctcaaggctgccctg
tatgtaggtgacttggaccctgatgtcacagaggacatgctctataagaagttcagacct
gctggcccactacgcttcactagaatctgccgtgacccagtgacccacagtcccctgggt
tatggttatgttaacttccgctttcctgcagatgctgaatgggcattgaacaccatgaat
tttgatttaattaatggtaaaccatttcgcctcatgtggtcacagccagatgaccgttta
aggaagtctggagttggaaatatattcatcaaaaacttggataaaaccatagacaatagg
gccctattttatttattttcagctttcgggaacattctttcctgtaaagtcgtatgtgat
gacaatggctctaagggttatgcttatgttcacttcgatagccttgctgctgccaatagg
gccatctggcacatgaatggagtccggctcaataaccgccaggtgtacgttggtcgattc
aaatttcctgaagagagagcagcagaagtcagaaccagagacagagcaacatttacaaat
gtttttgtaagaaactttggagatgacatagatgatgaaaaactaaagaaacttttcagt
gaatatgggccaactgagagtgttaaagtaataagagatgccactgggaaatctaaaggc
tttggatttgtaagatatgaaacacatgaagctgcccaaaaggctgtgctagaactgcat
ggcaagtcaatagatggaaaagtcctatgtgtagggagagcacagaagaaaattgaacgc
ctggctgaattaaggcggagatttgaacggctgaaactaaaagaaaaaagtaggcctcca
ggagtgcctatctatattaagaacttggatgagactatcaatgatgagaaactaaaggag
gaattttcttcatttggatcagtcagtcgggccaaagtgatgatggaagtggggcaaggc
aaagggtttggtgttgtctgtttttcttcttttgaagaggcttccaaagcagtggatgag
atgaatggtcgtataataggctccaagatattgcacgtcactcttggacaagctagacac
aggtggtga
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