Apodemus sylvaticus (European woodmouse): 127679926
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Entry
127679926 CDS
T10613
Symbol
Shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asyl03036
]
127679926 (Shoc1)
Chromosome and associated proteins [BR:
asyl03036
]
Eukaryotic type
Meiosis-specific proteins
Others
127679926 (Shoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
127679926
NCBI-ProteinID:
XP_052031462
LinkDB
All DBs
Position
3:complement(72755654..72831237)
Genome browser
AA seq
1476 aa
AA seq
DB search
MALNGKAMFSAFKYYAIDYLHENTVKERLYRNALLLQIPSCLNQNKQVIDDKYRRPWTRA
VPVPDETDNSVLEQWRTRFCVEDVPEKKTITGMMINGKFEEIVPSSNPNSPPGLENDKPF
PTKGYTDDFIPIKCSPHFPGVKAEHQGLLIDEEMVFMTKTRDNHLPTVHSLLSRLKLYLV
KDPFLDFKEELSGKDNFTECFSVQERLKPFVRDFHMTEETFCKKNLPSVFPFGFKSSIST
NPKQEILILPPSKLKEPLNSIPKIMDSVDESARFKRDLTSKHEFVTEDIKCNSTENLTFA
SLCEPECNEPGDLEMPPTHLSFPRQHSSVCSLYTGFQTFPFSAACKIHLLSAGESANKYC
MLWQLGGCRSSWVLFLLTVPRFQEPSSQYSLADMRNIFSIKGDSLVINTAKAKGWKQARL
NPVMAETLEHLKAYLCHNGLSSQETRLEIFLPTKVLQVESWLEHKSRPSSIVPVSEKSAD
VHQLHAQKRPIPSSEKEVPRLCLSGESVSVKKSKIEANPKSDQELGARVMQKSETSGAGL
GDPVPSVKAAASSQIKASYDKKQDNLDLLSEFIILRSKHQTFPSEADVKIHDQDQNNEFE
DKEKYSLTLQEESPVVSNNKAPEEKCQERTVDIIEMPASDTQCQAYCLLEATAIPILKKL
VCLCTYPAANWKFATVNFDQTRFFLKEQEKIINDAIHQDKSDDRKMTFKHAALLHLLVTI
RDVLLTCNLDTALGYLSNAKDIYKSVLDSCLDNIWRQLKILQFVKEKRPKTNYKIQELQR
QILTRLQSQQKMKVLIIIRMDSDREKHLLLKTLKKIEGLTMTVLRSNERKDFLETTSALK
GTHACVVVHSHSIGADFPWSSFSLVVEYNHVGHSCWAEHCQRLDIPFLAFKVAVPDTALQ
RHASLDPFGGFLLEIPIPYVFFASEGLLNTPEILRLLESTYNITLVERCCCGSLRLFGST
ECYVVVTVDEHTAVVVQDLEELHHEKASDNIIMRLMALSFQYSCCWIILYSKETLNSQYH
LTGKTLHHLAQIYAALVSSGLKSDELDVKLIIAPGVEETALIIRQIADYNLMTSKRDPHE
WLDKSWVEVSPSKEEMSLLDFPCVNPLVAQLMLHRAPSLHWLLTASPAELQELLPQVPGK
VLKHFYSITSLFKISSPTMTKSSQISSLQEDMNQTDLFISQSSVPIIQEHDDYYSYDETL
LKGTSSSPVELRETPFMLPSAAPHSQSSCWEDPSCGPDTVQNNPFLMNAESKKVTWPSFP
SRSDSESDVFSLGLTQVSCEPMMPLTDSQRRGTHGFVDCPEAKRTRNMQVSTPIFLPESC
QSRLHWDFKKNSCRKQIYSFNPSCGAEQTTYKWHSQNDDFSSNQPGLWDELENTYRNANA
GTKESFWRELPTAPSWDPVCAFESNVSQGGPKGLHFCQRPGNYLRQRRFPVSSSSWGDYE
TPTDLMYSQVPQPKKRRLMYEKVPGRVDGQTRLKFI
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atggcattgaacggaaaagctatgttttcagccttcaaatattatgcaatagactattta
catgagaacacagttaaagagaggctttacagaaatgctttattgcttcagattccttca
tgtttaaatcaaaataaacaagttattgatgataaatatagaagaccatggacaagagct
gttccagttccggatgagactgataattcagtcttggagcagtggagaaccaggttctgt
gtggaggatgttcctgagaagaaaacaattacaggaatgatgattaatggcaaatttgag
gaaattgttccaagttccaatccaaactctccacctggactagagaacgacaagccgttc
cccactaagggctacacagatgactttattcctatcaagtgctccccacacttcccgggt
gtgaaagcagagcaccaaggattacttattgatgaggaaatggttttcatgactaaaaca
agggacaatcatctaccaactgtgcatagtctcttgagcagactaaagctctatttggtg
aaggatccgtttttagacttcaaagaagagctctctggaaaggataatttcacggagtgt
ttctctgttcaagaacgtttgaaaccttttgtgagagatttccatatgaccgaggagacc
ttctgtaagaagaatctaccatcagtttttccttttgggtttaaatcctcgatatctaca
aatcccaaacaagaaattctcattctaccaccatcaaaactgaaggagccattaaactcg
ataccgaaaataatggactctgtagatgaaagtgcacgtttcaaaagagatcttacttcc
aagcatgaatttgttactgaggatataaaatgcaactccacagagaacttaacatttgca
agcctttgtgaaccagagtgtaatgagccaggagacctagaaatgccaccaacccatcta
agttttccaaggcagcattcttcagtgtgttcattatacacaggatttcagacatttcca
ttttctgctgcgtgtaaaattcatttgcttagcgctggagaatcagctaataaatattgt
atgctgtggcaactgggaggctgcagaagctcttgggtcctgttcttgctcacagttcca
agatttcaagaacccagcagtcaatattcacttgcagatatgaggaacatcttttctatc
aaaggagacagtcttgtgattaacactgcaaaagcaaaggggtggaaacaagcaagacta
aatccagtaatggccgaaacattggagcatctgaaggcgtatttgtgtcataatggtctg
tcttctcaggagactaggctggagatctttctgcctacaaaagtacttcaggtggagtcc
tggctagaacataagagtcgtccctcatccattgtgccagtcagtgaaaaatctgcagat
gttcaccaattacatgcacagaagagacccataccctcttcagaaaaggaagtgccacgc
ctttgtttgtctggtgaaagtgtctctgttaaaaaatcaaaaatagaagcaaatccaaag
agtgaccaagaactaggtgctagagtaatgcagaagagcgagaccagcggcgctggactt
ggtgatcctgtgccctctgtcaaagctgctgcttcttcacagatcaaggcatcttatgat
aaaaaacaagacaatttggaccttctgagtgagtttattattctgagaagtaaacaccag
actttcccttcagaagctgacgtcaaaatccatgaccaagaccaaaacaatgaatttgaa
gataaagaaaaatattctttgactcttcaagaagaaagtcctgttgtttctaataataaa
gcgccagaggaaaaatgtcaagaaagaacagttgatatcatcgagatgcctgcatcagac
acccagtgccaagcatactgtctcctagaagccacggcgattcctatcttaaagaagctt
gtctgcctctgtacttaccctgctgctaactggaaatttgccactgtcaattttgaccaa
acaagattcttcttaaaggaacaagaaaaaataataaatgatgctattcaccaagataaa
agtgatgacagaaaaatgactttcaagcatgctgctctcttacatctgctggtaacaatt
agagacgtccttttaacatgcaacttggatacagcattaggatatttgtcaaatgcaaaa
gatatctacaaaagtgtgttagactcctgtttggataacatttggagacagctgaaaatt
ttacagtttgttaaggaaaaaaggcctaaaaccaactataagattcaagaattgcaacgt
cagatactaactagactgcagagtcaacaaaaaatgaaggtactgattataataagaatg
gactcagacagagaaaagcatttgcttcttaaaacccttaagaaaatagaaggcttaaca
atgactgttttacgttcaaatgagagaaaagattttctggaaactaccagtgctttaaaa
ggtacgcatgcctgtgtggtcgtgcacagtcacagcatcggagcggatttcccctggagc
agcttctcgctcgtggtggagtacaaccacgtgggacactcttgctgggccgagcactgc
cagcggttggacatacccttcctggcctttaaagttgctgttccagacacagctctgcag
agacacgcctcgctggatccatttggtggatttctcttggaaattccgattccatatgta
ttttttgcatctgaaggacttcttaatactccagaaatactccggctgctggagtctacc
tataacatcacactagtggagaggtgctgctgtgggtcgctgagactctttggaagtaca
gagtgttatgtagtggtgacagttgatgagcacactgctgtagttgtgcaggacctagaa
gagttacatcatgagaaggcatcagacaatatcattatgagactaatggcactgtcgttc
cagtatagctgttgctggataattctatattccaaggaaacattaaactcacagtaccat
cttacaggaaagacacttcatcaccttgcacagatttatgcagctttggtttcctcgggc
cttaaatctgacgaactggatgtaaagcttataattgccccgggagtagaagagactgct
ttaataattcgacaaattgcagactacaatttaatgacatcgaagagagatccccatgaa
tggttggataaatcctgggtggaagtttcaccttctaaggaagaaatgagcctacttgat
ttcccttgtgtaaacccactggtggctcagctcatgttgcaccgagcaccgtccctgcac
tggctcctcacagcgagtcctgccgagctgcaggagctgctgccccaggttccaggcaaa
gtgctgaagcatttttatagcatcacttccttgttcaagattagttctcccaccatgaca
aagtcttctcagatctcatcacttcaggaagatatgaatcaaactgatctctttatttct
cagagttcagttcctatcattcaagaacacgatgactattattcctatgacgagaccttg
ctgaaaggcacaagctcttctcctgtggagctaagagaaactccattcatgttgccatct
gcagcaccacacagtcagagcagctgctgggaagaccccagctgtggccccgacacagtg
cagaataaccctttcctaatgaatgcagaatcaaagaaagtcacctggccctcctttccc
agccggagtgattcagagtcagatgtcttttctttgggcctaacacaagtaagttgtgaa
cccatgatgccactaactgattctcagaggagaggcactcatggttttgtagattgtcct
gaagcaaaaagaaccagaaacatgcaagtgtccacccctatctttttaccagagagctgc
caatcgcgccttcactgggactttaagaaaaacagttgtagaaaacagatttattcattc
aatccaagctgtggagcagaacagactacttacaaatggcactctcaaaacgatgacttc
tccagtaatcagccaggtctgtgggacgagttggaaaacacatacagaaatgcaaatgct
gggactaaggagtctttctggagagagctgccaactgctccaagctgggatccagtctgt
gcttttgaatctaatgtaagtcaaggaggacccaagggccttcatttctgccaaagacct
ggaaactacttaagacagagaaggttccctgtatcttcatccagttggggagattacgaa
acaccaacagacttaatgtactcacaagtaccacaacccaagaaacgacgtctaatgtat
gagaaagtccctggaagagtggatgggcaaacccggctgaagtttatatga
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integrated database retrieval system
