Apodemus sylvaticus (European woodmouse): 127680978
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Entry
127680978 CDS
T10613
Symbol
Atg4c
Name
(RefSeq) cysteine protease ATG4C isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04136
Autophagy - other
asyl04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127680978 (Atg4c)
04136 Autophagy - other
127680978 (Atg4c)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
asyl01002
]
127680978 (Atg4c)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
asyl04131
]
127680978 (Atg4c)
03029 Mitochondrial biogenesis [BR:
asyl03029
]
127680978 (Atg4c)
Peptidases and inhibitors [BR:
asyl01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
127680978 (Atg4c)
Membrane trafficking [BR:
asyl04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
127680978 (Atg4c)
Mitochondrial biogenesis [BR:
asyl03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
127680978 (Atg4c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
127680978
NCBI-ProteinID:
XP_052032779
LinkDB
All DBs
Position
3:113864453..113927299
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AA seq
458 aa
AA seq
DB search
MEASGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLLGKCYHFKYEDESKMLP
ARSGCAIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEASALTTDCGWGCTLRTGQMLL
AQGLILHFLGRAWTWPDALHIENSDSDSWTSNTVRKFTASFEASLSGERELRTPAVSLKE
TSGRHSDDHAVRNEIYHRKIISWFGDSPVAVFGLHRLIEFGKKSGKKAGDWYGPAVVAHI
LRKAVEEARHPDLQGLTIYVAQDCTVYNSDVIDKQTDSVTAGDARDKAVIILVPVRLGGE
RTNTDYLEFVKGVLSLEYCVGIIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF
PLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQDFERASEEISKMLKISSKEKYPLFTFVN
GHSRDFDFTSTAANEEDLFSEDEKKNFKRFSTEEFVLL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggaggcttcaggaacagatgaagttgacaagctaaaaactaaatttatttctgcttgg
aacaatatgaaatatagttgggtgttgaaaacaaagacatattttagtagaaattcgcct
gttttattgcttggaaaatgttatcattttaaatatgaagatgaaagcaagatgttgcct
gcaagatcaggatgtgccattgaagatcatgtaattgcagggaatgtggaagagttccgt
aaggatttcatttctagaatatggctgacctacagggaggaatttccccaaatagaagcg
tcagccttgacgacagactgtggctggggctgtacactgcggactggccagatgctgttg
gctcaaggactcatactacattttcttggtagagcttggacctggcccgatgcactgcat
attgagaattcagactctgactcatggacttccaacactgtcagaaagtttaccgcatca
tttgaagcatcactttcaggagaaagagaactcaggactccagcagtttctctgaaggaa
acgtctgggaggcattctgatgaccatgcagtccggaatgagatctaccacaggaaaatc
atctcctggtttggagattcccccgtggctgtctttggcttacaccgactgatagagttt
ggaaagaagtctgggaaaaaagctggcgattggtatggaccagcggtggtcgctcacatt
ttaagaaaagcagttgaagaagcaaggcatccggatttgcaagggctaaccatttatgtt
gcccaggactgcacagtttacaattctgatgtgattgataagcagactgattccgtgacg
gctggagatgcacgagacaaggctgttattattttagttcctgttagactcggtggagaa
aggaccaatactgactatctggagtttgtgaagggtgttttaagcctcgagtactgtgtc
ggtatcatcggcggcaaacctaaacagtcatattactttgctggatttcaagatgacagt
ttgatttacatggaccctcattactgccagtcttttgtggatgtcagcataaaggatttc
cctctcgagacattccactgtccatctcctaaaaagatgtcgtttcgaaaaatggatcct
agttgtacgattggattttactgtcgaaatgtccaggactttgaacgagcatctgaagaa
atctctaagatgttgaaaatttcctctaaggagaaatatccattatttacttttgtaaat
ggccattccagagactttgattttacgtctactgcagccaatgaagaagaccttttctca
gaagatgaaaagaagaatttcaaaagatttagcacagaagagtttgtcctcctttaa
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