Apodemus sylvaticus (European woodmouse): 127681036
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Entry
127681036 CDS
T10613
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03013
Nucleocytoplasmic transport
asyl05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
127681036 (Ndc1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127681036 (Ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127681036 (Ndc1)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
127681036 (Ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Pilin_N
Motif
Other DBs
NCBI-GeneID:
127681036
NCBI-ProteinID:
XP_052032884
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Position
3:122793511..122842499
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AA seq
674 aa
AA seq
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MATAASGPCAGGSPRDILWRVLGWRIVTSIVWSVLLLPVCTAAFIVFSGIDLFHPIQWLS
DSFNDFCSSQVISYLLLLAVVVIIISIFNVEFYTVVPSIPGSRLALIARILHPQQLTHSF
IHASMGMVVAWCAAIMTKGRYSSLVGPCTGTESLDSSAAQTCVNEYHLFFLLSGAFMGYS
YSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHIPK
VWISTALDLHTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLTSWYISWILFKIYATEAY
VFPVQPPFAEESDECLPKVLNSNPPLIVKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHP
HNWTAISRECLNLLNDMTQKLVLYQEAAATNGRMYSSCPVEPRKLSSPEETAFQTPKPSQ
TPSVPPLVKSSLFSPKLCTPDVSSPFFGTPLGSGVVNRMAGIFDVNTCYGSPQSPQLIRR
GPKLWTHTSDQQVPAISNPSPCASVTAEGQTVRQPSVLCSWIQNKREQIKNFLSKRVLIM
YFFSKRPEASIQAVFSEAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILSTLLTLQE
AVDKSFKLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASA
EHQRRLQQFLEFKE
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccacggctgcgagcgggccctgcgccggcgggtcgccgcgggacatcctttggcgc
gttttgggttggaggatagttaccagcatcgtttggtcagtactgcttctgcccgtgtgc
accgcagcctttatagtcttcagcggcatcgatctatttcaccctatacagtggctgtca
gattctttcaatgacttctgtagttcccaagtgatctcttacctcctgctgctggcagtg
gtcgttataattataagtattttcaatgtggagttctatacagtggtgccctccataccc
ggctcccgactggccctgatagcgcggatccttcacccccagcagctcacacactccttc
atacacgcttcgatgggaatggtggtggcttggtgtgcagccatcatgaccaagggccgg
tacagttctcttgtgggtccctgcactggaactgagagcttagatagctctgctgctcag
acctgcgtgaatgaatatcatctgtttttcctactgtctggagcattcatgggctatagc
tacagtcttctgtatttcattaacaacatgaattatcttccgttccctattatacagcag
tacaaatttttgcgtttccggagatctctcctcttactagttaaacatagctgtgtggaa
tccctgttcatggtcagaaatttctgcattgtttattatttttttggccatattcccaaa
gtgtggattagtaccgccctggaccttcatacagatgagcaggctcacaggcctcttgac
acgataggcggcctcctcaacgtctcgttactctaccatgtctggctgtgtggtgtcttc
ctcttgacatcttggtatatctcatggatactcttcaaaatctatgccacagaggcttac
gtgttccctgttcagccaccgtttgcggaagaatcagatgaatgccttcctaaagtctta
aacagcaatcccccgctcattgtaaagtatttggccttacaggacctgatgttgctttct
caatattctccttctcgaaggcaagaagttttcagcctcagccagccaggtggacatccc
cataattggactgctatttcaagggagtgtttgaatcttttaaatgatatgactcagaaa
ctggttctctaccaagaagctgctgctacaaatgggaggatgtattcatcatgcccagtg
gaacccaggaaactgagctctccagaagagacagcttttcagactccaaaacctagccag
acgccttccgtgccgcccttagttaaatcgtcactgttctctccaaaattatgtacaccc
gatgtttcaagtcctttttttgggactccgcttggctccggtgtagtgaaccgaatggct
ggaattttcgatgtaaacacctgctatggctctccccagagtcctcagctcataagaaga
gggccgaagctgtggactcacacttctgatcagcaagtgcctgcaatttctaatccatct
ccttgtgcctctgttactgctgagggtcagacagtgagacagcccagtgtgctgtgttcg
tggattcagaataagcgtgagcagattaagaattttttgtcaaaacgggtgctgataatg
tactttttcagtaagcgcccagaggcctccattcaggctgttttttcagaagcccaaatg
catatttgggctttagaaggtctgtctcacttagtagcagcatcatttacagaagataga
tttggagttgtccagaccacacttccagctatcctgagtactttgttgactctgcaggag
gctgtcgacaagtccttcaagctgcctcatgcttctagcaaaccaccccgaatttcagga
agccttgtggacacatcctacaaaacattaagatttgctttcagggcctcactgaaaacc
gctatctaccgtataaccaccacgtttggtgaacatctgaatgctgtgcaggcatctgca
gaacatcagagaagacttcagcagttcttggagttcaaagaatag
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