Apodemus sylvaticus (European woodmouse): 127681424
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Entry
127681424 CDS
T10613
Symbol
Arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03082
ATP-dependent chromatin remodeling
asyl04714
Thermogenesis
asyl05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127681424 (Arid1a)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
127681424 (Arid1a)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
127681424 (Arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asyl03000
]
127681424 (Arid1a)
03021 Transcription machinery [BR:
asyl03021
]
127681424 (Arid1a)
03036 Chromosome and associated proteins [BR:
asyl03036
]
127681424 (Arid1a)
Transcription factors [BR:
asyl03000
]
Eukaryotic type
Helix-turn-helix
ARID
127681424 (Arid1a)
Transcription machinery [BR:
asyl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127681424 (Arid1a)
Chromosome and associated proteins [BR:
asyl03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
127681424 (Arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
127681424
NCBI-ProteinID:
XP_052033617
LinkDB
All DBs
Position
3:complement(147214767..147293442)
Genome browser
AA seq
2291 aa
AA seq
DB search
MAAQVAPAAASSLGNPPPPPSELKKAEQQQREEAGGEAAAAAAERGEMKAAAGQESEGPA
VGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTEPPG
GGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQQSPGLA
ALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPPQAYALSSPRGGTPGSG
AAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPS
SARGYQGYPGGDYGGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMS
PGSSGGGGQPLARTPQSSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYG
SQTPQRYPMTMQGRAQSAMGSLSYAQQIPPYGQQGPSAYGQQGQTPYYNQQSPHPQQQQP
PYSQQPPSQTPHAQPSYQQQPQTQQPQLQASQPPYTQQPSQPPHQQSPTPYPSQQSTTQQ
HPQSQPPYSQPQAQSPYQQQQPQQPASSTLSQQAAYPQPQPQQSQQTAYSQQRFPPPQEL
SQDSFGSQASSAPSMTSSKGGQEDVNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVST
SGISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQ
MPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYTSPQPGSALSPRQPSGGQMHS
GMGSYQQNSMGSYGPQGSQYGPQGGYPRQPNYNALPNANYPNAGMAGSMNPMGAGGQMHG
QPGIPPYGTLPPGRMTHAAMGNRPYGPNMANMPPQVGSGMCPPPAGMNRKTQDSAVAMHV
AANSIQNRPPGYPNMNQGGMMGTGPPYGQGINSMAGMINPQGPPYPMGGTMANNSAGMAA
SPEMMGLGDVKLTPATKMNNKADGTPKTESKSKKSSSSTTTNEKITKLYELGGEPERKMW
VDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG
TSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIFAAADSKKSQPKIQPPSPAGSGSMQG
PQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGIQDAFPDGSDPTFQKRN
SMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPGSDPFMSSGQGPNGGMGDPYSRA
AGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMGTGAPQPNLMPSTPDSGMYSPSR
YPPQQQQQQQQQQQQQQQQRHDSYGNQFSTQGTPSSSPFPSQQTTMYQQQQQQQQNYKRP
MDGTYGPPAKRHEGEMYSVPYNSGPGQPQQQPLPAAQSQSASQPQAAQPSPQQDVYNQYS
NAYPATASAATERRPAGGPQNQFPFQFGRDRVSAPPGSSAQQNMPPQMMGGPIQASAEVA
QQGTMWQGRNDMTYNYANRQNTGSAPQGPAYHGVNRTDEMLHTDQRANHEGPWPSHGTRQ
PPYGPSAPVPPMTRPPPSTYQPPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMK
MQKAGPPVPASHIAPTPVQPPMIRRDITFPPGSVEATQPVLKQRRRLTMKDIGTPEAWRV
MMSLKSGLLAESTWALDTINILLYDDNSIMTFNLSQLPGLLELLVEYFRRCLIEIFGILK
EYEVGDPGQRTLLDPGRLTKVSSPAHTEEEEEEEEHLDPKLAEEEEGVGNDEETAFLGTD
KLSSESSEEKLVSKFDKLPVKIVQKNDPFVVDCSDKLGRVQEFDSGLLHWRIGGGDTTEH
IQTHFESKIELLPSRPCVPCPAPPRKRLTTVEGMPGTTEQEGPPPDGLPEKRITATMDDM
LSTRSSTLTDEGTKSAEAAKESSKFPFGISPAQSHRNIKILEDEPHSKDETPLCTLLDWQ
DSLAKRCVCVSNTIRSLSFVPGNDFEMSKHPGLLLILGKLILLHHKHPERKQAPLTYEKE
EEQDQGVSCDKEEWWWDCLEMLRENTLVTLANISGQLDLSPYPESICLPVLDGLLHWAVC
PSAEAQDPFSTLGPNAVLSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLYSTMVRF
LSDRKNPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLGFLEDSLAATQFQQSQAS
LLHLQNPPFEPTSVDMMRRAARALLALAKVDENHSEFTLYESRLLDISVSPLMNSVVSQV
ICDVLFLIGQS
NT seq
6876 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaggtcgcccccgccgccgccagcagcctgggcaacccgccgccgccgccc
tcggagctgaagaaagccgagcagcaacagcgggaggaggcggggggcgaggcggcggcg
gcagcggccgagcgcggggagatgaaggcagccgccgggcaggaaagcgagggccccgct
gtggggccgccgcagccgctgggaaaggagctgcaggacggggccgagagcaatgggggt
ggcggcggcggcggagccggcagcggcggcgggcccggcgcggagccggacctgaagaac
tcgaacgggaacgcgggccctaggcccgccctgaacaataacctcacggagccgcccggc
ggcggcggcggcggcagcagcgacggggtgggggcgcctcctcactcagccgcggccgcc
ctgccgcccccagcctacggcttcgggcaaccctacggccggagcccgtctgccgtcgcc
gccgcggcggccgccgtcttccaccaacaacatggcggacaacaaagccctggcctggca
gcgctgcagagcggcggcggcgggggcctggagccctacgccgggccccagcagaactcg
cacgaccacggcttccccaaccaccagtacaactcctactaccccaaccgcagcgcctac
cccccgcctccccaggcctacgcgctgagctccccgagaggtggcactccgggctccggc
gcggcggccgcgggctccaagccgcctccctcctccagcgcctctgcctcctcgtcgtct
tcgtccttcgctcagcagcgcttcggggccatggggggaggcggcccctcagcggccggc
gggggaactccccagcccaccgccacccccaccctcaaccaactgctcacgtcgcccagc
tcggcccgtggctaccagggctaccccgggggcgactacggcggcgggccccaggacggg
ggcgcgggcaaaggcccggcggacatggcctcgcagtgctggggggctgctgctgcggcg
gcggcggcagcggccgcctcgggaggggcccaacaaaggagccaccacgcgcccatgagc
cccgggagcagcggcggcggggggcagccgctcgcccggacccctcagtcctccagccca
atggatcagatgggaaagatgagacctcagccgtatggtgggactaacccatactcgcaa
caacagggacctccttcaggaccgcagcaaggacatgggtacccagggcagccatatggg
tcccagactccacagcggtaccccatgaccatgcagggccgggctcagagtgccatgggc
agcctctcttatgcacagcagattccaccttacggacagcaaggccccagtgcgtatggt
cagcagggccagactccatactataaccagcaaagccctcacccccagcagcagcagcca
ccttattcccagcagcctccatcccagacccctcatgcccagccttcatatcagcagcag
ccgcagactcagcaaccacagctccaggcctctcagcctccatatacccagcagccatcc
cagcctccacatcagcagtccccaactccatatccctcccagcagtccaccacacaacag
cacccccagagccagcccccctactcacagccacaggcacagtctccctaccagcagcag
caacctcagcagccagcatcctcgacgctctcccagcaggctgcatatcctcagccccag
cctcagcagtcccagcaaactgcctattcccagcagcgcttccctccaccacaggagctt
tctcaagattcctttgggtctcaggcatcctcagcaccctccatgacctccagtaaggga
gggcaagaagatgtgaacctgagtcttcagtcaaggccctccagcttgcctgatctgtct
ggttcaatagatgatctccccatggggacagaaggagctctgagtcctggcgtgagcaca
tcagggatttccagcagccaaggagagcagagcaatccagctcagtctcctttttctcct
cacacttcccctcacctgcctggtatccgaggcccatccccgtcccctgttggctctcct
gccagtgtcgctcagtctcgctcaggaccactctcgcctgctgcagtgccaggcaaccag
atgccacctcggccacccagtggccagtcggacagcatcatgcacccttccatgaaccaa
tcaagcattgcccaagatcgaggttatatgcagaggaacccccagatgccccagtatact
tcccctcagcccggctcggccttatctccacgtcagccttctggaggacagatgcactcg
ggcatgggctcctaccagcagaactccatggggagctatggtccccaggggagtcagtac
ggcccacaaggaggctatcctaggcagccgaactataatgccttgcccaatgccaactac
cccaatgcaggcatggctggaagtatgaaccctatgggtgctggaggtcagatgcatggg
cagcctggaatcccaccttacggaacgcttcctccagggagaatgactcacgcagccatg
ggcaacaggccttatggccctaatatggccaacatgccacctcaggttgggtcagggatg
tgtcctcccccagcggggatgaaccggaaaactcaagactctgctgttgccatgcatgtt
gctgccaactccatccaaaacaggccaccaggctacccaaatatgaatcaagggggcatg
atgggaactggacctccctatggacaggggattaatagtatggctggcatgatcaaccct
cagggacctccatatcctatgggtggaaccatggccaacaattcagcagggatggcagcc
agcccagagatgatgggccttggggatgttaagttaactcctgccacaaaaatgaacaac
aaggcagatggaacacccaagacagaatccaaatctaagaaatccagttcttctaccacc
accaatgagaagatcaccaaattgtatgagttgggtggtgagccagagaggaagatgtgg
gtggaccggtacctggccttcacggaggaaaaggccatgggcatgacaaatctgcctgct
gtggggaggaagcctctggacctctatcgcctctatgtgtctgtgaaggagattggtggg
ttgactcaggtcaacaagaacaaaaaatggcgggaacttgcaaccaacctcaatgtggga
acatcgagcagtgctgccagctccttgaaaaagcagtatatccagtgtctgtacgccttt
gagtgcaagatagagcggggagaagacccaccccctgatatctttgcagctgctgattcc
aagaagtcccaacccaagatccagcctccctctcctgcgggatcagggtctatgcagggg
ccacaaactcctcagtcaaccagcagttctatggcagaaggaggagacctgaagccgcca
accccagcatccacaccacatagtcagattccccccttaccaggcatgagcaggagcaac
tcagtcggaatccaggatgcctttcctgatggaagtgaccccacattccagaagcggaat
tccatgactccaaaccctgggtaccagcccagtatgaatacctctgacatgatggggcgc
atgtcctatgagccaaataaggatccttatggcagcatgagaaaagcgccaggaagtgat
cccttcatgtcctcggggcagggccccaatggcgggatgggtgacccctacagccgtgct
gctggccctgggctgggaaatgtggcgatgggaccacggcagcactatccctacggaggt
ccttacgacagagtgaggacggagcctggaataggacctgaaggaaatatgggcactgga
gcccctcagccaaatctcatgccttccaccccagactcggggatgtattctcctagccga
taccccccgcagcaacagcagcagcaacagcagcagcagcagcagcagcagcagcaacga
catgattcctatggcaatcaattctctacccaaggcaccccttccagcagccccttcccc
agccagcagaccacaatgtatcagcagcagcagcagcagcagcagaattacaagaggccc
atggacggcacatacggccctcctgctaagcggcacgaaggggagatgtacagtgtgcca
tataactctgggccagggcagcctcaacagcaaccgctgcctgcagctcagtcccagtct
gccagccagccacaggctgcccagccttcccctcagcaggacgtgtacaaccagtacagc
aatgcttaccctgccactgcctccgctgctactgagcgccgaccagcaggcggaccccag
aaccaatttccattccagtttggccgagaccgagtctctgcacctcctggttccagtgcc
cagcagaacatgccaccacagatgatgggcggccccatacaggcctcagctgaggttgct
cagcagggcaccatgtggcagggacggaatgacatgacctacaattatgccaacaggcag
aacacaggttctgccccacagggccctgcatatcatggtgtgaaccgaacagatgaaatg
ctccacacagatcagagggccaaccatgaaggcccatggccttcccatggcacacgccag
cctccgtatggtccttcagcccctgttccccccatgacaagaccccctccatctacctac
cagcccccaccaagcatgcagaatcacattcctcaggtatccagccccgctcccctcccc
cggcccatggagaaccgtacttctcctagcaagtctccattcctgcactctgggatgaaa
atgcaaaaggcgggtccgccggtgcctgcttcgcacatagcgcctacccctgtgcagccg
cctatgattcggcgggatatcaccttcccacctggctctgtagaggccacacagcctgtg
ttgaagcagagaaggcggctcacaatgaaagacattggaaccccggaagcatggcgggta
atgatgtccctcaagtctgggctcctggcagagagcacgtgggcgctagacaccattaac
atcctcctgtatgatgacaacagcattatgaccttcaacctcagccagctcccagggttg
ctagagctccttgtggaatatttccgtcgatgcctgattgaaatctttggcattttaaag
gagtatgaggtgggcgacccaggccagagaacattactagaccctgggagattaaccaag
gtgtctagcccagcccacacggaggaagaggaggaggaggaagaacacctagatcctaag
ctggcggaggaggaggagggggttggaaatgatgaggagacggcctttctgggcacagac
aagctgtcttcagagagtagtgaggagaagctagtcagtaagtttgacaagcttccagta
aagatcgtgcagaagaatgacccatttgttgtggactgctcagataagcttgggcgcgtg
caggagttcgacagcggcctgctgcactggcggattggcggtggggacaccactgagcac
atccagacccactttgagagcaagattgagctgctgccttcccggccttgtgtgccctgc
ccagcaccccctcgcaaacgcctcacaacagtagagggtatgccagggacaacggagcag
gagggtcccccgcctgatggccttccagagaaaaggatcacagccactatggatgacatg
ttgtccacgcggtctagcacattgactgacgagggaacaaagagtgcagaggccgccaag
gaaagcagcaagtttccgttcggcatcagcccagcacagagccaccgcaacatcaaaatt
ttagaggatgagccccatagtaaggatgagaccccactgtgtacccttctggactggcag
gattcccttgctaagcgctgtgtctgtgtctccaataccatccggagcctgtcgtttgtg
ccaggcaacgactttgagatgtccaaacacccagggctgctgcttatcctgggcaagctg
atcctgctgcaccataagcacccagagcgcaagcaggccccactgacttacgagaaggag
gaggaacaggaccagggggtgagctgtgacaaggaggaatggtggtgggactgcttggag
atgctccgggagaacacgctggtcactctcgccaacatctcggggcagttggacctatcc
ccgtaccccgagagcatctgcctgcctgtcctggacggactcctacactgggcagtttgc
ccttcagctgaagcccaggaccccttctcaacgctaggccccaatgccgtcctctctccc
cagagattggtcttggaaaccctcagcaaactcagcatccaggacaacaatgtggacctg
atcctggccacgcccccttttagccgcctggagaagttgtatagtaccatggtgcgcttc
ctcagtgaccgaaagaacccagtgtgccgggagatggccgtggtactgctggcaaacctg
gcccagggggacagcctggcagcccgggccattgcagtgcagaagggcagcattggcaac
ctcctgggtttcctggaggacagccttgctgccacacagttccagcagagccaggccagc
ctcctccatctgcagaacccaccctttgaaccaacgagtgtggacatgatgcggcgggct
gcccgggcactgcttgccctggccaaggtggacgagaaccactcagagttcactctttat
gagtcacgactgttggacatctccgtgtccccactgatgaactcagtggtttcccaagtc
atttgtgatgtactgtttctgattggccagtcatga
DBGET
integrated database retrieval system
