Apodemus sylvaticus (European woodmouse): 127683373
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Entry
127683373 CDS
T10613
Symbol
Pcdh18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asyl04515
]
127683373 (Pcdh18)
Cell adhesion molecules [BR:
asyl04515
]
Cadherins
Protocadherins
127683373 (Pcdh18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
BBS1
Syndecan
Cadherin_C_2
PepSY
PAH
Motif
Other DBs
NCBI-GeneID:
127683373
NCBI-ProteinID:
XP_052036519
LinkDB
All DBs
Position
4:118595847..118609293
Genome browser
AA seq
1135 aa
AA seq
DB search
MHQMNTKMHFRFALALLMAFFSHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPN
PSAVRFRAMPRGNSPLLVVNENTGEISIGAKIDREQLCQKNLNCSIEFDVLTLPTEHLQL
FHIEVDVLDINDNSPQFSRPVIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSAND
YFNIEVRTRTDGAKYAELIVVKELDRELKASYELQLTASDMGVPQRSGSSILKISISDSN
DNSPVFEQPSYTIQLLENSPVGTLLLDLNATDPDEGANGRIVYSFSSHVSPKIIETFKID
SERGHLTLFKPVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEISINLMS
PGKEEVSYVFEGDPIDTFVAIVRVQDKDSGLNGEITCKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDKGTPSLSSVRHFTVQVNDINDNPPHFQRSRYEFVISENNSP
GAYITTVTATDPDLGENGHVTYTILESSVLGGSITTYVTIDPSNGAIYALRIFDHEEVSQ
ITFVVEARDGGSQKQLSSNTTVVLTIIDENDNAPVVIGPAMHNSTAEISIPKGAESGFHV
TRIRVVDRDSGANAEFSCSIVAGNEENVFIMDPRSCDIHTNVSMESIPSTEWALSVIIQD
KGNPPLHTKVLLRCMVFDYAESVTSTAMTSVSHASLDVSMIIIISLGAICAVLLVIMVLF
ATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPS
SSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQ
GQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEG
FSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPAQPQQ
QHSHQGLDDDSQPAESGEKKKSFSTFGKDSPSDEDSGDSSTSSLLSEMSSVFQRLLPASL
DTYSECSEVDRSNSLERRKGPAQSKTGGYPQGVAAWAASTHFQNPASSSGTPLGTHSSVQ
PSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINKLLQDVRQS
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaaatgaatactaaaatgcactttagattcgcacttgcacttctgatggcgttt
ttcagccacgatgtcctggggaagaatctgaaatacaggatttatgaggagcagagggtc
ggatcggtaattgctagactatcagaagatgtggctgatgttttattgaagctaccaaat
ccttctgccgttcgttttcgagccatgccacgggggaattctcctctcctggtcgtaaat
gagaataccggagaaataagcataggggctaaaatcgaccgcgaacagctatgccaaaaa
aacttgaactgttcgatagagtttgacgtgctcactctgccgaccgagcatctgcagctg
ttccatattgaagtggacgtgctggacattaatgacaattcccctcaattctcgagaccc
gtcattcccattgagatatcggagagcgcagcagttgggactcgcatccctctggacagt
gcgttcgacccagatgttggggaaaattcccttcacacctactcgctctcggctaatgat
tattttaatatcgaagtgcggaccaggacggatggggctaagtatgctgaactcatagtg
gtgaaagagttggatcgtgagctgaaggctagctacgagcttcagctcacagcctccgac
atgggagtgcctcagaggtctggctcctctatcctgaaaatcagcatttcggattccaat
gacaacagccctgtctttgagcagccctcttacacaatacaactcttagaaaactcccca
gttgggaccttgctcctcgatctaaatgccaccgatccagatgagggcgctaatgggaga
attgtgtattctttcagcagtcatgtgtctcccaaaattatagagacttttaagatcgac
tcagaaagaggacacttaactctcttcaagccagtggattacgaaatcaccaagtcctac
gagatagacgttcaagcccaagatttgggtcccaattccatccctgctcattgcaaaatt
ataattaaggttgtggatgtcaatgacaataaacctgaaattagcataaacctcatgtcc
cctggaaaagaagaagtatcttatgtttttgaaggggatcctattgatacatttgttgct
atcgtcagggttcaagacaaggattctgggctgaatggggaaataacctgtaagcttcat
gggcatgggcattttaaacttcagaagacatatgaaaacaactacttaatcttgaccaat
gccactctggatagagaaaagagatctgagtatagtttgactgtgattgctgaggacaag
ggaacacccagcctctcttcagtgagacactttactgttcaagtcaacgacataaatgac
aatccacctcacttccagaggagccgatatgaatttgtcatctcagagaataattctcca
ggggcgtatatcaccacagttacagccacagacccggatcttggtgaaaatggacatgtg
acatacaccattttggagagttccgtcttgggaggctccattaccacgtacgtaaccatt
gacccatctaatggcgccatatatgccctcaggatctttgatcatgaagaagtgagtcag
atcacttttgtggtggaagcaagggatggagggagtcagaagcaactctccagcaacacc
acagtcgtgctgaccatcattgatgagaatgacaatgcccctgtggttatagggcctgca
atgcacaatagtactgcagaaatctccatccccaaaggagccgaaagtggttttcacgtc
acaagaataagggtggtcgacagagactctggtgcaaatgctgaattcagctgctccata
gtagctggtaatgaggaaaacgtctttatcatggatccaaggtcatgtgacattcatacc
aatgttagcatggaatccattccttctacagagtgggcactctcagttatcatccaggac
aagggcaatcctcctctgcacaccaaagtccttctgaggtgcatggtctttgactatgca
gaatctgtcacaagcacagccatgacctctgtcagtcacgcatccttggatgtgtccatg
atcataattatttccttaggagccatttgtgcggtgttgctggttattatggtactgttt
gcaacgagatgtaatagagaaaagaaagacaccagatcttacaactgcagggtggcagaa
tccacgtaccagcatcatcccaaaaggccatccaggcagattcacaaaggagacatcaca
ctggtgcccaccatcaatggcaccctgcccatcagatctcaccacagatcctccccatct
tcttctccaaccttggagagggggcaaatgggcagccgccagagtcacaacagtcaccag
tcactcaacagtttggtgaccatctcatcaaaccacgtgccagagaatttttcattagaa
ctcactcacgccactcctgctgttgagcaggtctcacagcttctctcgatgcttcaccag
gggcaatatcagccgcggccgagtttccgaggaaacaaatattccaggagctatagatat
gcccttcaagacatggataaatttagcttgaaagacagtggccgtggagacagtgaagca
ggagacagtgattatgatttggggcgagattctccaatagacaggctcctgggagaagga
ttcagtgacctcttcctcactgatgggagaattccagcagcaatgaggctatgtacagag
gagtgcagagtcctgggccactctgaccagtgctggatgcccccactgccctcgccatcc
tcggactacagaagcaacatgtttatccccggagaagaattcccggctcaacctcagcag
cagcattctcatcagggtcttgatgatgacagccagcctgcagaatctggagagaagaaa
aagagcttttccacctttgggaaggactcccctagcgacgaggattcgggggactctagc
acatcatctctgctatcggaaatgagcagtgtgttccagcgccttctccccgcatcccta
gatacctattctgaatgcagcgaagtggaccggtccaactccctggaacgtcgaaagggc
ccggcgcagagtaaaaccgggggttacccgcaaggggttgcggcctgggcagccagcaca
cattttcagaaccccgccagcagctctgggacccctctggggactcactccagtgtgcaa
ccttcttccaagtggctgccagctatggaggagatccctgaaaactacgaggaagatgat
tttgacaatgtgcttaaccatcttagcgatgggaaacacgaactcatggatgccagcgag
ctggtggctgagatcaacaaactgcttcaagacgtccgccagagctag
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