Apodemus sylvaticus (European woodmouse): 127685144
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Entry
127685144 CDS
T10613
Symbol
Setx
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl05014
Amyotrophic lateral sclerosis
Brite
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127685144 (Setx)
5.6.2.5 RNA 5'-3' helicase
127685144 (Setx)
Transcription machinery [BR:
asyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
127685144 (Setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
127685144
NCBI-ProteinID:
XP_052037957
LinkDB
All DBs
Position
5:8178934..8228236
Genome browser
AA seq
2707 aa
AA seq
DB search
MSTCCWCTPGGSSTIDVLKCYASSTGSSEFQTADEDLCYCLECVAEYHRARDEVPFLHEV
LWELETLRLISHFEKSMKAEAEDDDDLYIVDNNGEEQLFDCSGQDFENKLRVPLFEILKY
PYLLLHERVNELCVEALCRMEQNNCSFQVFDKYPGIYLFLVHPNELVRRWAILTARNLGK
VDRDDYYDLQEVLTCLFKVIELGLLESPDIYTSSVLEKGKLILLPAHMYDTTNYKNYWLG
ICMLLTILEEQAMDSLLLGSDKQNDFMQSILHTMEKQSDDDSMDPFWPALHCFMVILDRL
GSKVWGQLIDPIEAFQTIINNESYNREIQNIRNSSIRTKLEPEPHFDDMVTCSQIVYNYN
PEKTKKDSGWRSAICPDYCPNMYEEMETLASVLQSDIGQDMRVHNSTFLWFIPFVQSLMD
LKDLGVAYIVEVIHHLYSEVKDVLNQTDAVCDKVTEFFILILVSVIELHRNKKCLHLLWV
SSQQWVEAVVKCAKLPTTAFVRSCEKSPGSTPRGAAIVSSLALHSVPSNSVQLACVQLIR
GLLKEGYQLGQQTLCKRFWDKLNLFLRGNLSLGWQLTGQETHELQMCLKQIIRNIKFKMP
QYRTFGDPASTFKTPPSFKEESEQIDRKPKKDIYCLENCSPISPKEPVKADSHRVLIKAN
TTEEEDFKQHYIDLNEEDPLPAELCSKQKSEAFFSESALEQVKISIEKSGKENSLYTPPN
SSTSRNGPEWGCDRGVIISTHSLTDSSSDFMEKVSTSNEDVSLKDGTKTSKPSFKVQKDE
ICAKLSHVIKKQHRKNTLVDNIIDLEENTAMSDLENCSGTGRGTPKEDSIGHDMSSDPVL
EEKHEEEISQNSSLFKKETKSEELDNSSDDDEDKLQIKEGHADDDLVSFTEVTDTLVKKN
PCEGGMNPVKVVVESRDKEMRASTVEEQEPHDSSKPLVAGRQIDLCNITLISQTTVIQFP
SGLSKQNSFHLQKGDKRCLIANQNSTATCHGQIIVISDSDEEEEEEDEDEEDEKSCIEEN
IKQSKVCMEKECSEQHGLIVNNSMGKKLVKEEETVCPVEFEDSESQLFEFESSSEVFSVW
QDHTIDSKNSLQEEQKSCVTHVADSTNNNLGCGVDSLSEEVVRKKTEGVKEPAEPHSSVS
AEVFCKNGVKKLKRKRCDKVTAEDPQRPSSSVGTEQLADHRDPTESDLKSADLGMAAPSS
SVETDSTKSTKSRPHSKPVRKVPASKATKKTHSDTRRGQNKSSCYISCRTSPAIVPPKKF
RQCPEPTSTVEKLGLKKAPRKAFELSQRSLECIVQLRDHGKTVGVVDAPKKTKLISPQTL
SIKNNKKLLTSQDLQFQRLMRSRSHQKRDFDYKNTDMIRAVTRIVQGSDVLEADSDEPDN
HRGSEPLAISNEKQLANCMLSKPEVAEASSDPWVTGITYLVNQCESRVLSGGVPTDVVMV
SASEDPVTGGGALTVQVGEVAAVKAAEPESSSDTDDDNLFLTQHDPQDMDLCSQLENNKT
IIVAHKKDTVQREDPLSRPQLESLSITKCKYKDCVETTKNQGEYCPRHSEAKAADDDVFR
KPGLPLSVARPLRPTTTKIFSSSSASRTANLSKSLESTTLQSALKKSSGAQPNLKVTPPS
SMGSQKPVAEVKSLCNIFHFQNPSSSNRQNYKLTFSENRPMSSSSPVNILLPSQSIFDTF
IKEVLKWKYQMFLNFDKCGAPTSLCQSISRPVPVRFQDCAEYFNVFLPLIILNAFETMAQ
EWLNSPNKENFYQLHLRKFPADYRKYWEFLIYLEESELAKQHHPKENDLVFLVPAKKYMD
RHGMQDHNHYYCGYVHKFRRTSVMRSRKAECSLCIQTQDNLPASVKELTKCIVISSLVTT
QRKLKAMSLLSSRNQLARAVLNPNPMDFCTKDLLTTTSERIVSADLNEARKIAYLKDFNE
DQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTESQRKGHSDENFNA
KIKQNRVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCGDINLVRLGPEKSINTEV
LKFSLDSQVNHKMKKDLPSHIQEMLTRKEILDAQLDELSRQRALCRVGREMQRQELDEHI
AIVSKERQELASKIKEVQGRPQKAQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPFS
CVIVDEAGQSCEVETLSPLIHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMARFCKL
LEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTETIRCSSEWPFQP
YLVFDVGDGSERRDNDSYINVQEIKLVMEIVKLIKEKRKDISSRNIGIITHYKAQKTMIQ
KDLEKEFDKKGLLQPIMMGESRQQDSEASKQQQKNSECMHASDELGSSTVTQSGISSLEN
GATHTGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLASLQRLNVTITRAKYSLFI
LGHLRTLMENQHWYELIQDAQKRGAIIKTCDPNYRHDAMKILKLKPVLQRSLTHPPASAP
EAPRPQGGLPNNRLDSGLATTSFAASLYHTASDTVTSKEPERPLQDRLRDPRLFRRLDAE
AKGTFLKDPQPVSPQLPGVVHLLGEPGFPVVFQDLVVPPSTAIVAPLGSHRSPMQAETPP
AHPAAAATSTNKRKYSDPDAGLRHRREPRAFSGEQGRHGSMTHHVLRSTDWDRRRLDDSS
DKRRRFL
NT seq
8124 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgctgttggtgtactccaggtggttcttccaccattgatgtcctaaagtgc
tatgcatctagcactggatcaagtgaatttcaaacagctgatgaagacctctgctactgc
ttagagtgtgtggctgagtaccacagagccagagatgaggtgccattcttgcatgaggtt
ttatgggagctagaaaccttacgcctcataagtcactttgagaagtccatgaaggcagaa
gctgaagatgatgatgatttatatatagtggacaacaatggagaggaacagctgtttgac
tgcagtggccaagattttgaaaataagcttcgagttcctctttttgaaatactgaagtac
ccttacttgcttctgcatgagcgtgttaatgaactatgtgtggaagcgctttgtcgaatg
gaacaaaacaattgctcctttcaggtttttgacaaatatccaggcatctatttgtttttg
gttcatcccaatgaattggttcggcgatgggctattctgactgcaagaaacctggggaag
gtggacagagatgactattacgacttacaggaagttttaacttgcctttttaaagtcatt
gagctggggcttttggaaagtccagacatttatacatcttctgtgcttgaaaaaggcaaa
ctgatccttttgcctgcacatatgtatgatactaccaactacaaaaactattggctaggt
atttgcatgttgttgacaattcttgaggagcaagccatggattcactgttgctgggctca
gacaaacaaaatgattttatgcagtcaattcttcataccatggagaagcaatcggatgat
gacagcatggatcctttctggccagcattacactgtttcatggtgattcttgatcgcctt
ggatctaaggtatggggtcaacttattgaccctattgaagcatttcaaaccatcattaac
aacgagagctacaacagagagatccagaatatacggaacagctccataaggaccaagtta
gaaccggagccacattttgatgatatggtgacgtgcagccagattgtttataactataat
cctgaaaagaccaaaaaggattctgggtggagatcagccatttgcccagattattgtcca
aacatgtatgaagaaatggaaacattagccagtgtacttcagtcagatattggtcaagat
atgcgtgttcataacagcacttttctatggtttataccttttgttcagtcacttatggac
cttaaggatttgggtgtggcttacatagtagaagttattcatcatctatactcagaagtc
aaagatgtccttaaccagacagatgctgtctgtgacaaagtcactgaattttttattctg
attttagtatcagtgattgagctgcatagaaataaaaaatgtttgcatctgctgtgggtg
agttctcagcagtgggtagaagctgttgtgaagtgtgccaagcttcctaccactgcattt
gtacggagttgtgagaagtcacctggaagtacccccagaggagcagcaatagtgtcatcc
ttggcattgcattcagtgccatctaactctgtccagcttgcttgtgtacagttgattagg
ggtctcctcaaagaaggttatcagcttggtcagcaaacactttgtaagcggttttgggat
aaacttaacttatttcttcgaggaaatttgtctctgggttggcaattgactggtcaagaa
acccatgagttacaaatgtgtttaaaacaaataattagaaacataaaattcaaaatgccg
caatatagaacttttggggatccagcttctacattcaaaacccctccttcttttaaagaa
gaaagtgaacaaatagacaggaagcctaaaaaagacatttattgtttggaaaattgcagc
ccaatatctcctaaagagccagtgaaagctgatagccatcgagtattgattaaagcaaat
actacagaagaggaggacttcaagcagcattacattgatttgaatgaagaagaccctctt
ccagctgagttgtgctcgaagcagaaaagtgaggcttttttttctgaaagtgctctagag
caagttaaaataagcatagagaagtctggaaaagaaaactctttatatacaccaccaaat
agtagtacttcaagaaatggtccagaatggggatgtgacagaggagtgataatatcaaca
cattcattgactgattctagcagtgattttatggaaaaggtatctacatcaaatgaagat
gtctcattaaaggatggcactaaaacttcaaaaccaagtttcaaagtacagaaagatgaa
atttgtgccaagttatcacatgtcataaagaagcaacacaggaaaaatactttggtcgat
aacatcatcgatctagaggaaaatacagctatgtctgaccttgagaactgttcaggaaca
ggtagaggaactccaaaggaagatagcattggacatgacatgtcttcagaccctgttctg
gaggaaaagcatgaagaggaaatatctcaaaacagttcattgttcaagaaagagacaaaa
agtgaggagttggataatagttctgatgatgatgaagacaagcttcaaatcaaggaaggc
catgctgacgatgatttggtatcatttacagaagttactgatacactggtgaagaagaat
ccatgtgagggtggtatgaatcctgtaaaggtggtagttgaatcaagagataaggaaatg
agggcaagtacagtggaagaacaggagcctcatgacagtagcaagcctttggttgcaggt
cgtcaaatagacctctgtaacataactttaatatctcaaaccactgttattcaatttcca
tcaggtttaagtaaacagaattcatttcatctacaaaaaggtgataaaagatgtttgata
gctaaccaaaacagtactgccacctgccatggacaaattattgttatttcagattctgat
gaagaagaggaagaagaggatgaggatgaagaagatgaaaaaagttgtattgaggaaaac
atcaaacagagcaaagtatgcatggagaaagagtgttcagagcagcatggattgatagtt
aataacagtatgggaaagaagcttgtaaaggaagaagaaacagtgtgccctgtagaattt
gaagactctgaatctcagctctttgagttcgaaagttcatcagaagtcttttcagtttgg
caagatcatacaatagacagcaaaaactcccttcaagaggagcaaaagagctgtgtaact
catgtagctgatagtacaaacaataacttgggttgtggtgtggactctttgtctgaagag
gttgttagaaagaaaacagagggtgttaaagagcctgcagaaccacacagtagtgtttct
gctgaggtattttgtaaaaatggagtgaaaaaacttaagaggaaacgatgtgacaaagtt
acagctgaagatcctcagaggccttcctcttctgttggaactgaacaattggctgatcac
agagatcctactgaaagtgatttaaagagtgcagacttggggatggcagctcccagttca
agtgttgagacagattccacaaagtctacaaagtctcgtcctcactcaaaacctgttagg
aaagttccagcctctaaggctactaagaaaacacattcagacactagaagaggacagaat
aagagttcatgttacataagctgtagaacttctcctgctattgtgccaccaaagaagttt
cgccagtgtccagagccaacctcaacggttgaaaaacttggactgaaaaaagctcctcgg
aaggcatttgagttgtcccagaggtctctggagtgtatagtccagttacgtgaccacggt
aagactgttggagtagttgatgcccccaaaaaaactaaattaatttctcctcagactctt
tctatcaaaaataataagaagcttctgacaagccaggatcttcaatttcaaaggcttatg
agatccagatcacatcaaaaacgagactttgattacaaaaatactgatatgataagagca
gtgacacgtatagtacagggttcggatgtacttgaagcagactctgatgagccagataat
catagaggaagtgagccacttgctatcagtaatgaaaaacaattagcaaactgcatgctt
tccaaaccagaagtggcagaagcctcttctgatccttgggtgacaggtataacatatctt
gtgaaccagtgtgaatctagagtgttaagtggaggagtgccaacagatgtggtgatggtc
tctgcttcagaggaccctgtgacaggtggaggtgctctcacagtgcaagttggggaggtg
gcagctgtgaaagctgcagagccagaatctagtagtgatacagatgatgataatttattc
ctaacacaacatgatccccaagatatggatctttgctcacagttggaaaataataaaacc
attattgtggctcataaaaaggatacagttcagagagaagatcctttaagtcggcctcag
ttggagtctttgagtatcacaaagtgtaaatacaaagactgtgttgaaaccacaaaaaac
caaggtgaatactgcccaagacactctgaagctaaagcagcagatgatgacgtgtttcgt
aaacctggcttgcctctttctgtagccaggcccttgagacctacaactaccaagatattt
agctcaagcagcgcttcacgaactgccaatctttccaagtctttggaaagtaccacactt
cagtcagcactaaaaaagtcaagtggagcacagcctaatctgaaggtgacaccaccctct
tccatgggttctcagaagccagtggctgaagtgaaaagtctatgcaatatttttcatttt
cagaatccaagcagttccaacagacagaattacaagcttacatttagtgagaacaggcct
atgtcgtcatcttctccagtgaacattctcttgccatcgcagtctatctttgacaccttc
attaaagaggtcttaaaatggaaataccaaatgtttttgaactttgataagtgtggtgct
ccaacaagtctctgtcagtctatttcaagacccgtgcctgtcagatttcaagattgtgca
gaatattttaatgtttttctacctttgattatattgaatgcttttgaaacaatggcacag
gaatggctgaactctccaaataaagagaatttctatcagttgcatttacgaaaatttcct
gctgactatagaaaatactgggagtttctgatttacttggaggaatctgaactagctaaa
cagcatcacccaaaggaaaatgatctggtgtttttagttcctgcgaagaaatacatggac
aggcatggcatgcaagatcacaatcactattactgtggctatgttcataagtttcgtcgt
acttcagtcatgcgcagtaggaaagctgagtgttcattatgcatccagacacaagataac
ttgccagccagtgtaaaagaacttacaaaatgtattgtaatcagttctctggtaactaca
cagaggaaattgaaagccatgtctctgttgagtagtcggaaccagttggccagagctgtt
ctaaatccaaaccccatggacttctgtaccaaagatctactaactacaacttccgaaaga
attgtgagtgctgatttgaatgaagccaggaaaattgcctacttaaaagactttaatgaa
gaccagaagaaagctatagaaactgcatatgccatggtgaaacactcaccatccgttgcc
aaaatttgtctgattcatggaccacctggaacaggaaaatcaaaaactattgttggtctc
ttataccgcttactgacagagagccagaggaagggccattcagatgaaaatttcaatgcc
aaaatcaaacaaaaccgagtcctcgtgtgtgcaccttccaatgcagcggttgatgaactt
atgaaaaaaattatcctcgaattcaaagaaaaatgtaaagacaagaagaatcctttggga
aactgtggagatataaatttagtacgactgggtccagaaaaatctattaatacagaggtc
ctaaaattcagtttggacagccaagtcaaccataaaatgaaaaaagacttgccttctcat
attcaagaaatgcttacaagaaaagaaatactagatgctcaacttgatgagctttctcgt
cagcgagctctatgtcgagttgggcgggagatgcagaggcaagaattagatgaacacatt
gccatagtttcaaaagaaaggcaagaacttgcttcaaaaattaaagaggttcagggacgc
cctcagaaagcacagaataccatcatcttggagtcccatgtcatctgctgcacattgagc
actagtggtggtttattgcttgagtctgcttttcgaggtcaagggggtgtccccttcagt
tgtgtcatcgtagatgaggctgggcagtcttgtgaagttgagacgctttccccactcatc
caccgctgcaataaacttatcctagtaggagaccctaaacagctccctcccacagtcatc
tctatgaaagcacaggagtatggctatgaccagtcgatgatggcacgattctgcaagctg
ctggaagagaatgtggagcagaacatgattggcaggctgccggtgttacagcttaccatt
cagtacaggatgcatccagacatatgtctctttccttctaattatgtttataacaaaaac
ctgaagacaaatagattgaccgaaaccattcgatgttcatcagagtggccatttcagccc
tacctcgtgtttgatgttggagatggttcagaacgacgggataatgactcatatataaat
gttcaagaaataaagttggtgatggaaatagttaaacttattaaagagaaaagaaaagat
atttcctcccgaaatattggcataataacccattataaggctcagaagacaatgatccag
aaggatttggagaaagaatttgataagaaaggtttattacagcccatcatgatgggggaa
tcaaggcagcaagactctgaagcatccaagcagcagcagaagaacagtgaatgtatgcat
gctagtgatgagctcggatcctccactgttacacagtccgggatctccagcctagaaaat
ggtgccacccacactggacctgcagaagtggatacggtagatgccttccagggccggcag
aaagactgtatcattgttacctgtgtcagggcaagtgctgtgcaagggtcaataggattc
ctggcaagtttgcagagattgaatgtcaccattacacgagccaagtacagcctctttatc
cttggacatttaagaactctgatggaaaaccaacattggtatgaactgattcaggatgct
cagaagcgtggggccattattaagacctgtgacccaaactatagacatgatgcaatgaag
attctgaaactgaagcctgtgctacagaggagtctgacccatcccccagcctctgccccg
gaggcacccagacctcagggtggcttgcccaacaacaggctggacagtggacttgctaca
acatcttttgctgcttctttgtatcacacagcctctgatactgtcacttcaaaggaacct
gaaaggccacttcaagaccgacttcgagatccacgactattcaggagattggatgctgaa
gccaagggaacattcctgaaggatccacagcctgtgagtccccagctccctggggtagtt
catcttttgggagaacctggcttccctgttgttttccaggacctagttgtgccaccatcc
actgccatcgttgctcctctaggcagccacaggtcaccgatgcaggctgagacaccacct
gctcaccctgctgctgctgccacctccacaaataagaggaaatacagtgacccagatgct
gggctccgccacagaagagagcccagggccttcagtggagagcaggggaggcatggctct
atgactcatcatgtgctgagaagcactgactgggacagaaggaggctagatgacagcagt
gacaagaggagacggtttctatag
DBGET
integrated database retrieval system
