Apodemus sylvaticus (European woodmouse): 127685309
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Entry
127685309 CDS
T10613
Symbol
Rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asyl03000
]
127685309 (Rc3h2)
04121 Ubiquitin system [BR:
asyl04121
]
127685309 (Rc3h2)
Transcription factors [BR:
asyl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
127685309 (Rc3h2)
Ubiquitin system [BR:
asyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
127685309 (Rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-CCCH_UNK
zf-C3HC4_4
DUF4844
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
127685309
NCBI-ProteinID:
XP_052038329
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All DBs
Position
5:complement(16743162..16800024)
Genome browser
AA seq
1187 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSIKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVGVNSTVTTTAGNVISVI
GSTETTGNIVPSTNGISNTESSVSQLVSRSTDNAARTLETVKKVGKVGTNGQNAGPSAES
VSENKIGSPPKTPVSNTAATSAGPSNFGTELNSLPPKSSPFLTRVPVYPQHSENIQYFQD
PRTQIPFEVPQYPQTGYYPPPPTVPPGVTPCVPRFVRSNNVPESSLPPASMPYADHYSTF
SPRDRMNSSPYQPPPPQQYGPVPPVPSGMYAPVYDSRRIWRPAMYQRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNDPRTTVPLPREPCGHLKTSCEEQLRRKPDQ
WAQYHTQKTPVSSTLPVATQSPTPPSPLFSVDFRSDFSESVSGTKFEEDHLSHYSPWSCG
TIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFEAQRRTKEEDPIIPFSDGPII
SKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNDATSSA
HYVERDRFIITDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDEGR
HLTLNLLSKEIELRNGENDYTEDNVDTKHDRDIELELSALDTDEPDGQSEQIEEILDIQL
GISSQNDQLLNGTAVENGHPVQQHQKDPGKQKRQSLGEDHVILEEQKPILPVTSCFSQPR
PVSISSASCLPITTSVSVGNLILKTHVMSEDKNDFLKPIANGKMVNS
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagagtttctgtcctgtccaatctgctacaatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcgtgtccttttgaccagactgccataaacacagac
attgatgtgctccctgtcaactttgcacttcttcagttagttggagcccaggtaccagat
catcaatcaataaagttaagtaatctaggtgagaataaacactatgaagtggcaaaaaaa
tgtgtagaggatttggcactctacttaaaaccacttagtggaggtaaaggtgtagctagt
ttgaaccagagtgccctgagccgtccaatgcaaaggaaactagttacacttgtaaactgt
caactggtggaggaagaaggtcgtgtcagagctatgcgagcggcccgttcactaggagaa
agaactgtgacagaactgatactacagcaccagaatcctcagcagctgtctgccaacctg
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaagcc
ttgaagttggtattgctggcattagaagatggttctgctctctccaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggc
catgttgtgcagctattgtaccgagcttcttgttttaaggttactaaacgggatgaagac
tcttccctgatgcagctgaaagaggaatttcggagttatgaggcactacgcagagaacac
gatgcccagattgttcatattgccatggaagcaggactccgtatttcacctgagcagtgg
tcttcactgctgtatggggacttggctcataaatcacacatgcagtctatcattgataag
ctacagtctccagaatcatttgcaaagagtgtccaggaattgacaattgttttgcaacga
acaggtgaccctgctaatttaaatagactgagacctcatttggagcttctcgcaaacata
gaccctaatccagatgctgtttcaccaacttgggagcaactggaaaatgcaatggtagct
gttaaaacagttgttcatggtcttgtggacttcatccaaaattatagtagaaaaggccat
gagacacctcagccgcagccaaacagcaagtataaaactagtatgtgccgagatttacga
caacaagggggttgcccacgaggaacaaattgtacatttgcccattctcaggaagagctt
gaaaagtaccgattacggaacaaaaagatgagcgcgactgtaagaacatttcctcttctg
aataaagttggtgtaaacagcactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaactgggaacattgttccaagtacaaatggaatttcaaatacagaa
agcagtgtttcccagctagtctcacgaagcactgacaatgcagcaaggactttggagact
gtgaagaaagttggaaaggttggcactaacggtcagaatgctgggccctctgcagagtct
gtgtctgaaaataaaattggttctccacccaagactcctgtaagtaatacagcagctacc
tccgctgggccctctaattttggaacagagctgaattctctgcctcccaaatccagccca
tttctaactagagttccagtatatcctcagcattctgaaaacattcagtattttcaagat
ccaaggactcagataccttttgaagtcccacaatacccacaaacaggatactacccacca
cctccaacagtaccacctggtgtgactccctgtgttcctcgctttgtgaggtccaataat
gttccagagtcctccctcccacctgcttccatgccatatgctgatcattacagtacgttc
tcccctcgagatcgcatgaattcttctccttaccaaccacctcctccgcagcagtatgga
ccagttcctccagtaccctctggaatgtatgctcctgtgtatgacagtaggcgcatctgg
cgcccagctatgtatcaacgagatgacattattagaagcaattctttacctccaatggat
gtgatgcattcatctgtctatcagacatctttacgggaaagatacaactcattagatgga
tattattcggtggcttgtcagccaccaaatgacccaaggacaactgtgcctttaccaagg
gaaccttgtggtcatttgaagactagttgtgaggaacagttaagaagaaagccagatcaa
tgggcacagtatcatacccagaaaacgcctgtctcttcaactcttcctgtagcaacacag
tcaccaacaccaccttctcctctattcagtgtagacttccgatcagatttctctgagagt
gtgagtggcacaaaatttgaggaagaccatctttcccattattctccctggtcttgtggc
accataggctcttgtataaatgccattgattcagagcccaaagatgtaattgctaattca
aatgctgtgctgatggacctggacagtggggatgtaaagagaagagtgcatttatttgaa
gctcagagaaggacaaaagaagaagacccaattattccctttagtgatggacccattatt
tcaaaatggggtgcaatttcccggtcctcccgaacaggttaccatacaacagatcccgtc
caggcaactgcttcccaaggaagtgcaactaagcccatcagtgtatcagattatgttcct
tatgtcaatgctgtcgattcaaggtggagttcatatggtaatgatgccacatcatctgca
cactatgttgaacgggacagattcattattactgatttatctggtcatagaaagcactcc
agcaccggagaccttttgagcattgagcttcagcaggccaagagtaattcattacttctt
cagagggaagctaatgctctggccatgcaacaaaagtggaattccctggatgaaggccgt
caccttactttaaatcttctaagcaaggaaattgaactgagaaatggagagaatgattac
acagaagacaatgtagatacaaagcatgatagggatattgagttagagctttcagccctt
gatactgatgaacctgatggccagagtgaacaaattgaagaaattttggacatacaactt
ggtatcagttctcaaaatgatcagttgctcaatggaacagcagtggaaaatggtcatcca
gtccagcagcaccagaaggacccaggaaagcagaagagacagagtttaggtgaagaccat
gtgattctggaggagcaaaagccaattttgccggtaacatcttgctttagccagccacgc
ccagtgtctattagcagtgcaagctgcctccccatcaccacatctgtcagtgttggcaac
ctcattctgaaaactcacgttatgtctgaagataaaaacgactttttaaaacctattgca
aatgggaagatggttaacagctga
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