Apodemus sylvaticus (European woodmouse): 127685787
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Entry
127685787 CDS
T10613
Symbol
Ubr1
Name
(RefSeq) E3 ubiquitin-protein ligase UBR1 isoform X1
KO
K10625
E3 ubiquitin-protein ligase UBR1 [EC:
2.3.2.27
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asyl04121
]
127685787 (Ubr1)
Enzymes [BR:
asyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127685787 (Ubr1)
Ubiquitin system [BR:
asyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
UBR box proteins
127685787 (Ubr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRT6_C
WHD_UBR1
zf-UBR
ClpS
Motif
Other DBs
NCBI-GeneID:
127685787
NCBI-ProteinID:
XP_052039313
LinkDB
All DBs
Position
5:complement(103460946..103582651)
Genome browser
AA seq
1757 aa
AA seq
DB search
MADEEMDGAERMDVSPEPPLAPQRPASWWDQQVDFYTAFLHHLAQLVPDIYFAEMDPDLE
KQEENVQMSIFSPLEWYLFGEDPDICLEKLKHSGAFQLCGKVFKSGETTYSCRDCAIDPT
CVLCMDCFQSSVHKNHRYKMHTSTGGGFCDCGDTEAWKTGPFCVDHEPGRAGTTKETLNF
PLNEEVIAQARRIFPSVIKYIVEMTIWEEGKELPPELQIREKNERYYCVLFNDEHHSYDH
VIYSLQRALDCELAEAQLHTAAIDKEGRRAVKAGVYATCQEAKEEIKSHSENVSQHPLHV
EVLHAVVMAHQKFALRLGSWMNRMMSYSSDFRQIFCQACLIEEPGSENPCLISRLMLWDA
KLYKGARKILHELIFSSFFMEMEYKKLFAMEFVKYYKQLQKEYIRDDHERSISVTALSVQ
MFTVPTLARHLIEEQNVISVITETLLEVLPEYLDRNNKFNFQGYSQDKLGRVYAVICDLK
YILISKPIIWTERLRAQFLEGFRSFLKILSCMQGMEEIRRQVGQHIEVDPDWEAAIAIQM
QLKNILLMFQEWCACDEDLLLVAYKECHKAVMRCSTNFMSSTKAVVQLCGHSLETKSYKV
SEDLVSIHLPLSRTLAGLHVRLSRLGAVSRLHEFVPFDGFQVEVLVEHPLRCLVLVAQVV
AEMWRRNGLSLISQVFYYQDVKCREEMYDKDIIMLQIGASIMDPNKFLLLVLQRYELVDA
FNKSISTKDQDLIKQYNTLIEEMLQVLIYIVGERYVPGVGNVTKEEVIMREITHLLCIEP
MPHSAIARNLPENENNETGLENVINKVATFKKPGVSGHGVYELKDESLKDFNMYFYHYSK
TQHSKAEHMQKKRRKQENKDEALPPPPPPEFCPAFSKVVNLLSCDVMMHILRTILERAVD
TESNLWTEGMLQMAFHVLALGLLEEKQQLQKAPEEEVTFDFYHKASRLGSSATNAQNIQM
LLEKLKGIPQLEGQKDMITWILQMFDTVKRLREKSCLVVASTSGLESIKSEEITHDKEKA
ERKRKAEAARLHRQKIMAQMSALQKNFIETHKLMYGNTSEITGKEDSVMEEESTSAVSEY
SRIALGPKRGPAVTEKEVLTCILCQEEQEVKLENNAMVLSACVQKSTALTQHRGKPVDLF
GEALDPLFMEPDLAHGTYTGSCGHVMHAVCWQKYFEAVQLSSQQRIHVDLFDLESGEYLC
PLCKSLCNTVIPIIPLQPQKINSENAEALAQLLTLARWIQTVLARISGYNLKHAKGEAPA
VPVLFNQGMGDSTFEFHSILNFGVQSSVKYSNSIKEMVILFATTIYRIGLKVPPDELDPR
VPMMTWGTCAFTIQAIENLLGDEGKPLFGALQNRQHNGLKALIQFAVAQRTTCPQVLIQK
HLVRLLSVVLPNLQSENTPCLLSVDLFHVLVGAVLAFPSLYWDDNVDLQPSSLSSSYNHL
YLFHLITMAHMLQILLTTDTDLSPGLPLVEGEEDSEEARCASALFVEVSQHTDGLTGRSA
PGWSLWLSLRNGITPYLRCAALLFHYLLGVTPPEELFANSAEGEYSALCSYLSLPTNLFL
LFQEYWDTIRPLLQRWCGDPALLNSLKQKSAVVRYPRKRNSLIELPDDYSCLLNQASHFR
CPRSADDERKHPVLCLFCGAILCSQNICCQEIVNGEEVGACVFHALHCGAGVCIFLKIRE
CRVVLVEGKARGCAYPAPYLDEYGETDPGLKRGNPLHLSRERYRKLHLVWQQHCIIEEIA
RSQETNQMLFGFNWQLL
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagagatggacggcgccgagaggatggacgtcagcccggagcctcccctg
gctccacagcggccggcatcgtggtgggatcagcaagttgatttctatactgctttctta
catcatttggcacaattagtgccagacatttattttgctgagatggacccagatttggaa
aagcaagaagagaatgtacaaatgtcaatattcagtcctttggagtggtacttatttgga
gaggatccggatatttgcttagagaagttaaagcacagtggagcattccagttgtgtggg
aaggttttcaaaagtggagaaacaacatattcttgtagggattgtgcaattgatccaacg
tgtgtgctctgtatggactgcttccagagtagtgttcataaaaaccatcgttacaagatg
catacttctactggaggaggcttctgtgactgtggagacacagaagcatggaaaactggc
cccttttgtgtggatcatgagcccggaagagcaggtactacaaaagagaccttgaatttc
ccattgaatgaagaggtaattgctcaagccaggagaatattcccttcggtgataaagtac
attgtagaaatgactatatgggaagaaggaaaggaattacctcctgaactgcagataagg
gagaaaaatgaacgatattattgtgtccttttcaacgacgagcaccattcctatgatcat
gtgatctacagtctgcagagagctcttgactgtgagcttgcagaggcgcagctgcacaca
gctgccattgacaaagagggtcgccgggctgtcaaagcaggagtgtatgccacttgccag
gaagccaaggaggaaataaagagtcactcggaaaacgtctctcagcaccccctccatgtg
gaagtgctgcatgccgtagtcatggctcaccagaagtttgctctgcgcctcggctcctgg
atgaacagaatgatgagctattcaagtgactttaggcagatattttgccaggcctgcctc
atagaagaacctggctctgaaaatccatgtcttataagcagattaatgctttgggatgca
aaactttataaaggtgcccgtaagatccttcatgaattgatctttagtagtttttttatg
gagatggaatacaaaaaactctttgctatggaatttgtgaagtattataaacaactgcag
aaagagtatatccgtgatgaccatgagaggagcatctctgtaaccgcactgtccgttcag
atgttcactgtcccaaccttggcccggcatcttattgaagagcaaaatgttatttcggtc
attactgaaactctgctagaagtcttacctgaatacttggacaggaacaataaattcaac
ttccagggttatagccaggacaaactgggacgagtatatgcagtcatttgtgacctaaag
tacattctgattagcaagcctatcatatggacagaaagattaagagcacagttcctggaa
ggtttccggtcttttctgaagattctttcctgtatgcagggaatggaagaaatcagaaga
caagttgggcaacacattgaagtcgaccctgactgggaggctgccattgctatacagatg
caactaaagaatattttgctcatgttccaagagtggtgtgcttgtgatgaagatctctta
ctagtggcatataaagaatgtcacaaagctgtaatgaggtgcagtacaaatttcatgtct
agtaccaaggcagtagtacaattgtgcggtcacagtttggaaaccaaatcctacaaagtg
tctgaggaccttgtaagcatacatctaccactctctagaactcttgctggtcttcatgta
cgtttaagcagactaggtgctgtttcaagactgcatgaatttgtgccttttgatggcttt
caagtggaggtcctagtggagcaccctttacgctgtctggtgctcgtagcccaggtcgtg
gccgagatgtggcgaagaaatgggctctctctcattagccaggttttctattatcaagat
gttaaatgcagggaagaaatgtatgataaagatatcatcatgcttcagattggagcatct
ataatggatcccaacaagttcttgttactggtacttcagaggtatgaacttgttgatgct
tttaacaagtccatatccacaaaagaccaggatttgattaaacagtataatacattaata
gaagaaatgcttcaggtcctcatctatattgtgggagaacgttatgtacccggcgtggga
aatgtgaccaaagaggaggttataatgagagagattactcacttactgtgcattgagccc
atgccacacagtgctatcgccagaaacctacctgagaatgaaaataacgaaactggcttg
gagaatgtcataaacaaagtggccacatttaagaaaccaggtgtgtcgggccacggagtg
tatgaactgaaagatgaatcactgaaagacttcaatatgtacttttaccattattctaaa
acacagcatagcaaggctgaacatatgcagaagaaaaggagaaaacaagaaaataaagat
gaagcattgccaccaccacctcctcctgagttctgccctgctttcagcaaagtagtcaac
ctgctcagctgtgatgttatgatgcacatcctcaggaccatcctcgagcgggcagtggac
acagagtctaatctgtggacagaggggatgctgcagatggcgttccatgtattggccctg
ggcttgctggaggagaagcagcagcttcagaaagctcctgaagaagaagtgacttttgac
ttttaccataaggcttcaagattgggaagttcagccacgaatgctcagaatatacaaatg
cttttggaaaaactcaaaggaatccctcaattagaaggccagaaggacatgataacgtgg
atactccagatgtttgacacagtgaagcgattaagagaaaaatcttgtttagttgtggcc
agcacttccgggttggaatccattaaaagtgaggagatcactcacgataaagaaaaagca
gagcggaagagaaaagctgaagccgccaggctacatcgccagaagatcatggcccagatg
tctgccttacagaaaaacttcattgaaactcacaaactcatgtacggcaatacgtcagaa
ataacagggaaggaagactccgttatggaggaagagagcacctcagcagtcagtgagtac
tctagaattgctctgggtcctaaacggggcccagctgttacagaaaaggaggtgctgaca
tgcatcctctgccaagaagaacaagaggtgaaactagaaaataatgccatggtgttgtca
gcctgtgtgcagaaatccaccgccctaacccagcaccgggggaagcctgtggacctcttc
ggggaagcgctggaccctctcttcatggaaccagacttggcacatggaacttacacagga
agctgtggccacgtcatgcatgcagtgtgttggcaaaagtattttgaagctgtccagctg
agctcccagcagcgcattcacgttgacctattcgacttggagagtggcgagtacctgtgc
ccgctctgcaagtcgctctgcaacaccgtcatccccatcattcctctgcagccgcagaag
atcaacagtgagaatgcagaggctcttgctcaacttctgaccttggcacggtggatacag
actgttcttgccaggatatcaggttataatttgaagcatgctaaaggagaagctccagca
gttcctgtcttatttaatcaaggaatgggggattctacttttgaatttcattccatcctg
aattttggagttcagtcttcggtaaaatattcaaatagtatcaaggaaatggtcattctc
ttcgccacaacaatttacagaatcggcctgaaagtgcctcctgatgaactagacccgcga
gtgcccatgatgacctggggcacgtgtgccttcaccatccaggccattgaaaaccttttg
ggagatgaaggaaaacctctgtttggagcacttcaaaatagacagcataatggtctgaaa
gcgttaatacagtttgcagttgcacagaggactacttgtcctcaggtcctgatacagaaa
catctggttcggctcctgtcagttgttcttcctaacctacaatcagaaaatacaccatgc
cttctatctgtagatctatttcatgttctggtgggcgctgtcttagcattcccatccttg
tactgggatgacaacgtggatctgcagccttcatcactcagttcctcgtataaccacctt
tatctcttccatctgatcaccatggcacatatgcttcagatcctccttacaacagataca
gatctgtctccagggctcccgcttgtcgagggtgaagaggacagtgaggaggctcgctgt
gcatctgctctctttgtggaagtctcacagcacacagacggcctcactgggcgcagtgct
cccggctggtccctttggctctccctgaggaacggcatcaccccttacctccgctgtgct
gcgctgcttttccactatttacttggagtaactccgcctgaagaactgtttgctaattct
gctgaaggagaatacagtgcactctgtagctatctgtctttacccacaaatctgttcctg
cttttccaggagtattgggataccataaggcccttactacagaggtggtgtggagatcct
gccttactcaactctttgaagcagaaaagtgctgtggtcaggtaccctagaaaaagaaat
agtttgatagagcttcctgatgactacagctgtcttctaaatcaagcttctcactttagg
tgtccacggtctgcagatgatgagcgaaagcatcctgtcctctgtcttttctgtggggcc
atcctgtgttctcagaacatctgttgccaagaaatagtgaatggggaagaggttggagca
tgcgtttttcatgcacttcattgtggtgctggagtctgcattttcctgaaaatcagagaa
tgcagagtggttctggtagaaggaaaagccagaggctgtgcctacccagccccttacttg
gatgaatatggagaaacagacccggggctaaagaggggaaacccacttcatttatctcgg
gagcggtatcggaagctgcatttggtctggcaacagcactgcattatagaagagattgct
cggagccaggagactaatcagatgctatttggattcaactggcagttactctga
DBGET
integrated database retrieval system
