Apodemus sylvaticus (European woodmouse): 127685819
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Entry
127685819 CDS
T10613
Symbol
Spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl05014
Amyotrophic lateral sclerosis
asyl05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
127685819 (Spg11)
05022 Pathways of neurodegeneration - multiple diseases
127685819 (Spg11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asyl03400
]
127685819 (Spg11)
DNA repair and recombination proteins [BR:
asyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
127685819 (Spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
127685819
NCBI-ProteinID:
XP_052039378
LinkDB
All DBs
Position
5:complement(104682815..104742101)
Genome browser
AA seq
2449 aa
AA seq
DB search
MAAKPGPGSAASPGSAGAMERVLPMLLVRIPAEETAQLGPRAQLHRELEALGSLTAAGSL
RVLSLAPGSRGGSSCCLPGPFRQFLWEESQNSTSRDKPKLLVAREDYELLLYEFDLRDGR
CDAALLHSCCGRTLQKLSEDQGVSIAFKSLRILSFYNNTSLLLINKSLLLRVVFPARGSG
IPVLGCLSLPLPAQAADTIIDVQLCKRLLFVLSTVGWIYIFDTADGMHVARVDLTLLRED
SEQPEPASISSFTSLNVSPDLDILVLVSSSNTAVALNLHLYFRQHPGHLLCEGTLEDLPI
EGPSGIDEDDLVNSVHNMKLTKVSFQADRSWRAQLSSLNESVRSSEPEVSCGAPWFQGAL
CLESLGSGYHNPVVPNHVSIPFHSIPHGQGAFPKEHTKTSEPGRLWKTMQLSGQEPTEPS
ELKCLSVTGFTALFTWAVRTTSCTIVLWDLESQSMQCFSLSQKCTPVDISGDQQLCLALT
DNGLSLILFGLTQEEFLNRLMIHGSASTVDALCHLNGWGRCSIPIHALEAGIENRQLDTV
DFFLKSKENLLTPSSKSPAPTQQQHLSPHSYLRQVEDLTPALDLLCSAVRESDSETHSKH
FAEQLLHLTLSFLNKQVRELLVHSEELDEHLQKGVAILTSYINELRTFMIKFPWKPGDAI
DEPVINEDVLTVKEGQVWEELSFEEVIADAILNNRIPEAQTFFRITGHSAQQLEELVRIG
LDLAFDSLKNNNVEEASRLLRNMGFSVEDELLKICFYTTDRNIRDFLVEILKEKECFSEK
ERRTVDFVHQVETLYSGHVPENAQMQTFPRYWIKEQDSLKQKSVLDTFLKCDKKDVFNKQ
DHRIALNWAHWWDLQTQECILLPRMSPEEYKARSPEALWRHLTAHHDWSSISLWMEEFQA
QETVSPQQSRWPPLSAATIEQGTCCNSHMRNTILDTLARRGIFLASELEDFELLLLRLSR
IGGVMQDTLPVQRYKCSAGCDFHSRFILYCLEHGLQHLLYVYLDYYELSPGNCPFLEKKE
LHEAHPWLEFMVQCRQVSSNLTDPKLIFQASLANAQILIPTSQASVSSMLLEGHTLLALA
TTMYAPGGVSQVIQNEDNENCLKRVDPQLLKVALTPYPKLKAALFPQCTAPSILPSDITL
YHLIQSLPPFDPSRLFGWQSANTLAIGDTASQLPHFSSPDLVNKYAVVERLNYTYYLHHG
RPSFAFGTFLVQELIKSKTPKQLIQQVGKEAYTLGLSSFSSPSVGSACVCFLELLGLSSL
KLRVDLKMANVILGSKRRSEDACSSAIRESLAEKLSKLANDDRAATEELLVLLEEGVWDS
IEQQGFDRLSNESRSQWALVLQFCMLHERKLSVSYLRECAKANDWLQFLVHSQLHSYLPE
EVESLLPYFSPVLQSHLKLASERLSSGSPSERLSSGSPSERLSSGSPSVGDSCLQELQTS
KGETRDFLELLHRGSAESASWRWLLAEALEHRVPILSVLASCIQGASVVPCLCVWIVTSV
EDKVAAEAMGHIQISVEDHHWSLEDLSIIWRTVLTRRKSHTLIRGFQLFIKDSPLLLIME
MYEQCMFFKNYERAKAKLVEFQESLETLDTVATRVLPTIPASWMKDQVCFLLKLMPQQCE
TQYELGKLLHLFVGTEHLFPDGPDVQKLCLLSQVLKDTPVTISPAVISSYSTENFQRECT
SILEKLKADGQFAVARRVAELAALPVDSLVIEQLTQEMRTLTHTQQWSLKQARLDFWKKC
HETFKKNSISNRAASSFFSSQAPVVSERSAEQDGLAERHLLLTLAGHWLAQQEPAPVEEL
EELEKGIWMCRIAQHACGGAEEEAKPSLSQRKVAAAELSCDSSASELSFSKLAALNTSRY
LDLNSLPPKMCENTLEPKEQESLNTLIGQLLDGGCVHEASRVCQYFRFYSQDLVLVLHCR
ALASTEASMEDLHSEIRALLSSAALPEDLESPSVPLRKVHSSSSLDSQSFAMAPPTDEVA
RNLHTLINKCLHGKNYCRQVLCLYELAKELGCSYEDVAARDSEAMLRAILASQRPDRCRQ
AQVFINTQGLEPDTVAELVAEEVTRELLTPSEGTGEKQPFNPAEESQTFLQLTALCQDRT
LVGMKLLDKIPSVPHGELSCTTELLILAHHCFTFTCHMEGIIRVLQAARMLTDNHLAPNE
EYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDPTGTLKTALLDYIKRCRPGD
SEKHNMIALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGAQLKQLLLKALTLMLD
AAESYTKDSCVRQALHCNRLTKLITLQIHFLNSGQNTMLINLGHQKIMDCIMTLPRFYQA
SIVAEAYDFVPDWAEVLYQQVILKGDFSYLEEFKQQKLLRPNIFEDISKKYKQHQPTDRV
TENLKKFFSYCEDIYLYYKLAYEHKFFEIVNMLLKDPQTGCCLKDMLAG
NT seq
7350 nt
NT seq
+upstream
nt +downstream
nt
atggctgccaagccagggcccggaagtgctgcctcccccggcagcgccggggccatggag
cgggttcttcccatgctgctggtacggatccccgcagaggagacggcgcagctgggaccg
cgggcgcagctgcaccgagagctggaggccctggggagcctgacggctgcgggcagtctc
cgcgtgctttccttggcgccgggcagtaggggtggaagcagctgctgcctcccaggcccc
ttcaggcagttcctatgggaggagtctcagaacagcacgtcaagagacaagcccaaactg
cttgttgctagagaagattatgaactgctcttgtatgaatttgacttgagagatggaaga
tgtgatgcagccttattacacagctgttgtgggaggaccctgcagaaactctctgaagat
caaggtgtcagtattgccttcaagtctttgagaattctatcattttacaacaacacgtca
ttactgctcatcaacaaaagtcttctcctacgcgttgtgtttccggcgagaggatctggg
attccagtgctgggctgcctctcactgcccttgcctgcacaggcagcagacacgattatt
gacgtgcagctctgcaagagacttctttttgttctgagtacagtaggctggatctatatt
tttgacactgcggatggcatgcatgtagcgcgcgtggacttgactcttctcagagaagac
tctgagcagccggagccagccagcatctcttcctttacgtcattgaacgtgtctccggac
ttagatattttggtgcttgtcagctcatccaatactgcagtagctcttaacctacattta
tatttcaggcagcacccaggacacctactgtgtgagggaacactggaagaccttcctatt
gaaggaccctcaggaatagatgaagacgaccttgttaactctgtccacaacatgaaactg
accaaggtgtcctttcaggctgacaggtcctggagagcccagctgtcatcactgaatgaa
tcagtgaggagctcggaaccagaggtttcctgcggtgctccgtggttccagggtgctttg
tgtttggagtccctgggatctggttaccacaacccagttgtgccaaaccacgtttccatt
ccattccattccatcccacatggccagggtgcttttcctaaggagcacaccaaaaccagt
gaaccaggaaggctgtggaagacaatgcagctgagtgggcaagagcccacagagccctca
gagctcaagtgtctatctgtgacgggatttactgcactgtttacttgggcagtcagaacg
accagctgcaccatcgtcctctgggacttggagagccagagcatgcagtgcttttctctc
agccagaagtgtactcccgtagacataagcggagaccagcagctgtgccttgctttaaca
gataacggtctgtctctgattttgtttggtttaactcaagaggagtttttgaacaggctg
atgatccacggcagcgccagcactgtggacgccctttgtcaccttaatggttggggacgg
tgctccatccctatccacgctctagaggctggcatagaaaatcgtcagctggacacagta
gatttcttcttaaaaagcaaggaaaatcttcttactccgtcttcaaaatctcctgctccc
actcagcagcagcacctgtcaccacattcatacctaaggcaggtggaagacttgacccca
gccctggatttactctgctcggcagttagagaaagtgactcggaaacccacagcaagcac
ttcgcagagcagctgcttcacctcacgctgtctttccttaacaagcaagtaagggagctt
cttgttcactctgaagagctagatgagcatttacagaaaggagtggccattttgaccagc
tacatcaatgaacttcggacttttatgataaagtttccttggaaaccaggagatgccata
gatgaacctgttataaatgaagatgtcctcacagtgaaggagggccaggtttgggaggaa
ctcagctttgaggaagttattgctgatgccattttaaataacagaataccagaggcacaa
actttctttaggattactggtcattcagctcaacaactcgaggaactggttaggataggc
ctagatttggcctttgacagtttaaaaaacaacaacgtggaggaggcctccaggctcctg
aggaacatgggcttcagtgtggaagatgagttgcttaagatatgcttttatacaactgat
agaaatatacgggactttttggttgaaattttaaaagaaaaggaatgtttttctgagaaa
gaaagaagaactgtagactttgtccatcaagttgaaacattgtattcaggacacgtcccg
gaaaatgcacagatgcagactttccccaggtattggataaaggaacaggactctttgaaa
cagaaatctgtcttggacacattcctcaaatgtgataaaaaagatgtgtttaacaaacag
gaccatagaattgcattgaattgggctcactggtgggatctgcaaacacaggaatgtatt
cttctccccagaatgagtccagaagaatacaaagcacgttccccagaagccctctggaga
cacctcacggctcaccatgactggtcaagcatcagcttgtggatggaagaattccaggcc
caggaaactgtttcacctcagcagagcaggtggccccctctgagtgctgccaccattgag
cagggcacttgctgcaacagtcacatgaggaacaccattttagacacactggccagaaga
ggcatttttcttgcatctgagctggaagactttgaactcctcctcctgaggctgagccgg
attgggggcgtaatgcaggacaccctcccagtgcagcgctacaaatgctcggcagggtgc
gactttcattcccgcttcatcctctactgtttggagcacggcctgcagcatcttctctac
gtctaccttgactactacgaacttagtcctggaaattgtccttttttggaaaagaaagaa
ctacatgaagctcacccttggctggaatttatggttcagtgtcggcaagtttccagtaac
ttgacagatcccaaactgatctttcaggctagccttgcaaatgctcagattttgattccc
accagtcaggccagtgtgagcagtatgctgttggaaggacacaccctcttggcccttgct
accaccatgtatgctcctgggggtgtcagccaggtcatccagaatgaagacaacgagaac
tgtttgaagagagtggacccccagctactgaaggtggccttaacaccttacccaaaactc
aaagctgcgctcttcccacagtgcactgctcctagtatcctgccctctgatattacactc
taccacctcatccagtccttgccaccctttgatcctagcagactgttcggctggcagtct
gccaacacgctagctataggagatacggccagtcagctcccacacttctccagccctgac
ctggtgaataaatatgctgtagtggaacgtctgaattatacatactatttacatcacgga
cgcccatcgtttgcctttggtacctttctggttcaggagttgatcaagagtaagactcca
aagcaactgatccagcaagtaggcaaggaggcctataccctggggctctcttccttcagc
agcccgtcagtagggagcgcctgtgtctgcttcttagagttgctcggcctcagcagcctc
aagctcagagttgacctgaaaatggcaaatgtaattttgggctccaagcgtagatctgaa
gatgcttgctccagcgccatcagagagtctctggctgagaagctgtctaagcttgctaac
gacgacagagcggccacagaagagctgctcgtcctcttggaggaaggcgtgtgggacagc
attgagcagcagggctttgacaggctgtccaatgagtccaggagccagtgggccttagtg
ctacagttctgcatgctccacgaaaggaaactgagcgtgtcctaccttagagaatgtgcc
aaagccaatgattggctgcagttcctggttcacagccagctccatagctacctcccagaa
gaggtagaatctcttcttccatatttcagtcctgtccttcaaagccacttgaagctggct
tctgagagactgtcgtcagggtccccctctgagagactgtcgtcagggtccccctctgag
agactgtcgtcagggtccccctctgtgggtgacagctgcctccaggaactccagacaagc
aaaggagaaacgagggatttccttgaacttctccaccggggctcagctgagtctgcctct
tggcgctggctcctggctgaggcactggaacatcgggtccccatcctcagcgtcctggcc
tcgtgtatccagggtgccagtgttgtcccctgtctctgtgtttggatcgtcacctctgtg
gaggacaaggttgcagctgaagcaatgggacacattcagatctctgtagaggaccatcat
tggagcctggaggacctgtccatcatctggagaactgtattaacaagacgcaagagccac
actctcatccgaggtttccagctcttcattaaggattccccacttctactgattatggag
atgtatgaacagtgtatgttcttcaagaattacgagagagccaaagctaagcttgtggag
ttccaggaaagccttgaaacgcttgacacagtggccacaagggtccttcctaccatacct
gcctcgtggatgaaggaccaggtgtgtttcctcttgaaactgatgccacagcagtgtgag
acgcagtatgagctggggaaactcctccacctgtttgttggaactgagcatctcttccct
gatgggccagacgtgcagaaactgtgtctcctcagccaagtactgaaggacacacctgtc
accatcagccctgcagtcatttccagctatagcactgagaattttcagcgggaatgtaca
tctattttggagaaactaaaggcagacggacagtttgctgtggccaggagagtggcagag
ttagcagcgctgcctgtggacagcttggtgattgaacagttaacccaggaaatgcgaacg
ctaacacacactcagcagtggtccctgaaacaagcaagacttgacttctggaaaaaatgc
catgaaacttttaagaaaaactctatttcaaacagagcagcctcttccttcttctctagc
caagcccctgtggtgagtgagcgctctgctgagcaagacggccttgcggagcgccatctg
ctgctcacgctggcgggccactggcttgcccaacaagagccagctcccgtggaggaactg
gaggagctggagaaagggatttggatgtgccgcatcgcccagcacgcctgtgggggcgct
gaggaggaagccaagcccagcctctctcagcgaaaggtagctgctgccgaactttcctgt
gatagctcagcaagtgagctgtcgttctccaagctcgctgccttgaacacatccagatac
ttagacctcaacagtcttccacccaagatgtgtgagaacacactggaacccaaagagcag
gagtcactgaacactctgattgggcagctgctggacggtggctgtgtgcatgaagcaagc
agagtgtgccagtatttccgtttctacagtcaggatctagtgttggtgctgcactgcaga
gccctggcctctacagaggccagcatggaagacttgcactcagagattcgtgccctcctc
tcaagtgccgcactgcctgaggacctggagagcccgagtgtccctcttcggaaagtccat
agctcttcaagtttggacagtcagtcatttgcgatggcgccacccactgacgaagtggct
cgcaatctccacactctcataaacaagtgcctccacgggaagaattattgccggcaggtt
ctctgtctgtatgaacttgccaaggagttgggctgttcctatgaagatgttgctgctagg
gacagtgaagccatgctccgagcaatcttggcttctcagcgacctgatcgatgcagacaa
gcccaggtcttcatcaacacccagggccttgaaccagacactgtggctgaacttgtggct
gaagaggtgacacgggagctactgactccatcagagggaacaggagaaaagcaacctttc
aacccagcagaggaaagccagacatttcttcagctaactgctttgtgtcaagaccgtaca
ttagtaggcatgaagttgttggacaagattccctcagtcccccatggggagctgtcctgc
accacagagctcctgatcctggcccatcactgctttacctttacgtgccacatggagggc
atcatcagagtcctacaggctgcccggatgcttacagataaccacttggctcccaacgag
gagtatggattagtggtccgcctcctcactggcattgggcgctacaatgagatgacgtac
atatttgacttgctgcatcaaaagcattatttcgaagttctgatgaggaagaagctagat
ccaactggcaccctgaagacagccctactagactacatcaaacgctgccgccctggagac
agtgaaaagcacaacatgattgccctgtgcttcagcatgtgccgggagataggggagaat
cacgaggcagcagcctgcatccaactgaagctgatcgagtctcagccctgggaggaaagc
ctcaaggatggagcccaactaaaacagctcctgcttaaagccctgactctgatgttggat
gcagcagagagttacaccaaggactcctgtgtgcgacaagccctgcactgtaaccggctc
accaagttgataacactacagattcactttctcaacagtgggcagaatacaatgcttatc
aacttgggccatcagaagataatggactgtatcatgaccctacctcggttctaccaggct
tctattgtagctgaggcctatgactttgttcctgattgggctgaggtactctaccaacaa
gtgattcttaaaggagacttcagttatttggaagaatttaagcagcagaagttactaaga
cccaatatatttgaagatatttccaaaaaatataaacaacaccagcctactgacagagtc
acagaaaacctgaagaagttcttttcctattgtgaagatatctacttgtattacaagttg
gcatatgaacacaaattttttgaaattgtaaatatgcttctgaaggaccctcaaacggga
tgctgccttaaagatatgctcgcaggctag
DBGET
integrated database retrieval system
