Apodemus sylvaticus (European woodmouse): 127686240
Help
Entry
127686240 CDS
T10613
Symbol
Pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
Ribosome biogenesis [BR:
asyl03009
]
Eukaryotic type
90S particles
Other 90S particles
127686240 (Pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
127686240
NCBI-ProteinID:
XP_052040219
LinkDB
All DBs
Position
1:complement(14522139..14565290)
Genome browser
AA seq
1876 aa
AA seq
DB search
MANLEESFPRGGTRKTHKSEKSSQQVVEQDNLFDISKEEGSIKRKKSQKGPAKTKKLKIE
KRKSVKSMKEKFELLSLESLCEGMRILGCVKEVNELELVVSLPNGLQGFVQVTEICDAYT
QKLNEQVAQEEPLEDLLRLPELFSPGMLVRCVVSSLDVTESGKKSVKLSVNPKRVNKVLN
AEALRPGMVLTGTVSSVEDHGYLVDIGVGGTRAFLSLQKAQGYIRQKNKGAKFKVGQYLT
CLVEEVKSNGGVVGLSVEHTTVSSAFATEEQSWNLNNLLPGLVVRAQVQKVTQFGLQLNF
LTFFTGLVDFMHLEPKKMGSYSSKQMVKACILCVHPRTRVVRLSLRPIFLHPGRPLSRIS
YQQLGAVLDNVPLQGFFKTAGAIFRLKDGALAYARLSHLSGSKKAVNAEAFKPGSTHKCR
IIDYSQMDELALLSLRKSIITAPFLRYHDIKTGTVVKGTVLAIKPFGILVKVGEQMQGLV
PSMHTADIMMKNPEKKYNPGDEVKCRVLLCDPEAKKLIMTLKKTLVTSKLPAITCYEAAT
PGLQTHGVILRVKDYGCIVKFYNDVQGLVPKHELSAQHIPDPEKVFYAGQVVKVAVLSCE
PSKERMLLSFRLLTDSEPKAESGEASQKKGRAVSIGQLVDVKVLEKTKTGLEVAILPHNI
PAFLPTPHLSDHVANGPLMHHWLQTGDTLHRVLCLSQSERHTLLCRKPALVSTVEGGQDP
KSLAEIQPGMLLIGFVKCIKDYGVFVQFPSGLSGLSPKTIMSDKFVTTPSEHFVEGQTVV
AKVTNVDASKQRMLLSLRLSDCSLGDWASTSFLLLCQCLEELQGIRSLMSNQDSVLIQTL
ADMIPGMVLDTVVQEVLEDGSVVFSWGSVPDLILRASKYHRAGQEVEPGQKKKVVVLHVD
MLKLEVHVSLQQDLVSRKTRKLRKGSRHQGIVQHLEESFAVASLVETGHLVAFSLISHLN
DTFHFDSEKLRVGQGVCLTLKTTEPGVTGLILAVEGPASKRTIMPARRESETVDDKEEEE
EMAEEEEDLTVRSKKRHSLAIGDKVTGTIKSVKATHAVVTLDDGFVGCIHASRILDDVPV
GTSPTTTLKVGKKVTARVIGGRDVKTSKFLPISHPRFVLTILELSVRPSELKGSYSALNT
HSVSPVEKLRQYQAGQTVTCFFKKYNVIKKWLEVDIGPDLRGRIPLLLTSLSFKVLKHPD
KKFQIGQAIKATVVDPDVPRAFLCLSLIGPYKLEEGEVAMGRVLKVTPNKGLTISFPFGK
IGKVNLFHVSDSYSEAPLEDFCPQKIVRCYVLSTAHRALTLSLRSSRTNRETKSKIEDPE
VNSIEDVKEGQVLRGYVKSVLSSSVVIGLGPSVLGLAKYSHVSECIPPEKELFNRCLPEG
RLVTAKILCVNPVKNLIELSLLPSDTGKPDVFSASPEPPLPNQEERRGGAEEGLKGEEKK
SQKRKERNPKGQEGSGLSSQEKKEPQKSQRGGQGKRERLASESEQEVVSKRPKISVAPED
DDGGVEVYYREGEDEVEELKLPPRGKQTRPTEVPRLRLSSGFAWDVGLDSLTPALPIREE
SSDSEEEEQLQQAKKKKGKKERELERQKAEKELSRIEEALMDPGRQPESADDFDRLVLSS
PSSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQE
SLTKVFERAVQYNEPLKVFLHLADIYTKSEKFKEAGELYNRMLKRFRQEKAVWIKYGAFV
LGRSQAGASHRLLQRALECLPTKEHVDVIVKFAQLEFQLGDAERAKALFENTLSTYPKRT
DVWSVYIDMTIKHGSQREVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVK
AKALEYVEAKNSGLED
NT seq
5631 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacctggaagaaagcttcccccgagggggtacacggaaaacccacaaatcggag
aaatcttcccaacaggtggttgaacaagacaacttatttgatatttccaaagaagaaggt
tccattaaaaggaagaagagccagaaaggaccagcaaaaacaaaaaaattgaaaattgaa
aagagaaaatccgtcaaatctatgaaagagaagtttgaacttctcagtcttgagtcctta
tgtgaagggatgcggattttgggttgtgtgaaagaggtgaatgagctggagctggtggtc
agtcttcccaacggactccaagggtttgtgcaagtgactgaaatctgcgacgcctacact
cagaagctgaatgaacaggtggcacaagaagaacctctggaggacctcctccgcctgccg
gagctcttctcccctggaatgttggtgcggtgtgtggtgagcagcctggatgtcacggaa
agtggcaagaagagcgtcaagctatctgtgaaccccaaacgtgtgaacaaggtgctgaat
gctgaggccctgaggcctggcatggtgctgacaggcacagtgtccagcgtggaagaccat
ggctacctagtggatattggtgttggtgggaccagagcctttctgtcgcttcagaaggcg
caaggatacattcgacagaagaacaaaggtgctaagttcaaagtcggccagtacctgacc
tgtctggttgaagaggtgaagagcaacggaggagttgtgggtctctctgtagagcacacc
acggtttcttctgcctttgcaactgaggagcaaagctggaacctgaataacttactaccg
gggcttgtggtcagagcccaggtgcagaaggtaactcagtttggactccagctcaatttc
cttacgttcttcacgggcctggttgacttcatgcatctggagcccaagaaaatgggatcg
tattcttcaaagcaaatggtaaaagcctgcatcctctgtgtccatcctcgcaccagagtt
gtgcgactgagcctgcgtcccatcttcctgcatccggggcgtccactctcccgcatctct
taccagcagctaggggccgtgctggataatgttcctcttcagggttttttcaagacggct
ggggccatcttcaggctgaaggatggggcactggcctacgcccggctcagccatctctct
ggttctaagaaagcagtcaatgccgaggccttcaaaccagggagcactcacaagtgcaga
atcattgactacagccaaatggatgagctggccttgctctctctgcggaaatcaattatt
acagctccatttcttagatatcatgacatcaaaacagggacagtagtaaaggggacggtg
ctggctattaagccatttgggatactggtgaaggtgggtgagcagatgcaaggcctggtg
ccctccatgcacacggctgacatcatgatgaagaacccagagaagaagtacaacccaggg
gatgaggtcaagtgcagggttttactctgtgaccctgaagccaagaagctaataatgacc
ttgaagaaaacccttgtcacatccaaactacctgccattacctgctatgaggctgccaca
cctggcctccagacacacggtgttatcctaagggtcaaggactatggctgcattgtaaaa
ttctacaatgatgtgcagggactcgtgcctaaacatgagcttagtgcccagcatatccct
gacccagagaaggtcttttacgctggccaggtggtaaaggtggcagtgctgagctgtgag
ccttccaaagagcggatgctcctgtccttcagactgttgactgattcggagccaaaggct
gagagtggtgaggccagtcagaagaagggacgcgccgtgagcattgggcagttggtggat
gtgaaggttctggagaagaccaaaactgggctggaggtggccattctgccccacaacatc
cctgctttcctccccacacctcatttgtccgaccatgtcgccaatggccctctgatgcat
cactggctccagacaggtgacacccttcaccgagttctgtgtctgagccagagtgagaga
cacactcttctctgcaggaagccagctttggtctccacagtagaaggtggccaggacccc
aagagcctcgcagagatccagcccggaatgctgctcattggttttgtgaagtgcatcaag
gactatggcgtgttcgtccagttcccctcaggtcttagtggactgtcccccaaaactatc
atgagtgacaagttcgtaaccactccgagtgaacattttgtggagggtcagacagttgtt
gctaaggtgaccaatgtggatgcatcgaagcaaaggatgttgctgtctctgcgtctgtcc
gactgcagcctgggggattgggccagcaccagcttcctcctcctgtgccagtgcctggaa
gagctgcagggcattcgcagcctcatgagcaaccaagactctgtattgattcagacactg
gctgacatgatcccagggatggtccttgataccgttgtacaagaggtgttggaagatggt
tcagtggtgttcagctggggctctgtgcctgacctgatcctgagagccagcaaataccat
cgggcagggcaggaggtggagcctgggcagaagaagaaggtcgtggttctacacgtggac
atgttgaagttggaggtccatgtgtcccttcagcaggacttggtgagcaggaagactagg
aagctgagaaaaggcagtagacaccagggaatcgtgcagcatctggaggagtcctttgcc
gtggcctccttggtggagactggccacctcgtggctttctctctgatctctcacctcaac
gataccttccactttgactctgagaagctacgtgtggggcagggtgtctgccttaccctc
aagaccacagaaccaggagtgaccggtctgattttggctgtggaaggaccagcttctaag
aggaccattatgccagctcggagggaatcagagacagttgatgacaaggaggaggaggag
gagatggcggaggaagaggaggacttgactgtgaggtctaagaagaggcatagcctggct
attggggacaaagtcactgggaccattaagtctgtgaaggccacacatgctgttgtgacc
ctagatgacggctttgttggctgtatccatgcctcccgcatcctagatgatgtcccagtg
ggcacctctccgacgaccacactgaaagttgggaagaaagtcactgcgagagtgatcggt
gggcgagatgtgaagacatctaagtttctcccaataagtcaccccagatttgttctcacc
atcctggagctgagtgttcggccaagtgagttgaaaggtagctacagtgctcttaacact
cactctgtgagccccgtggagaagctgaggcagtaccaggctgggcagactgtgacatgc
ttcttcaagaagtacaatgttataaagaagtggctcgaggtggacattggaccagacctc
cgagggagaattcccttgttgctcacatccctcagcttcaaggttctgaaacacccagac
aagaagttccagattgggcaggccatcaaggccactgttgttgacccagatgtccccagg
gctttcttatgtctgtcactcataggtccttacaaactggaagagggtgaggtagctatg
ggccgagtgttaaaggtgacacccaacaagggactgaccatctccttcccttttgggaag
atagggaaagttaatttatttcatgtgagtgactcgtactccgaggcccccctggaagac
ttctgcccccagaagattgtcagatgttacgtcctgtccacagcacaccgtgcgctgact
ttgtcattacgatcgtccaggacaaacagagagacaaaaagtaaaatagaagatccagaa
gtcaactccattgaggacgtcaaggaagggcaggtcctgcggggctatgtgaaatctgtc
ctatcgagtagtgtggtcataggcctcggaccttcagtcctgggtttggccaagtattca
catgtctctgagtgtatcccacccgagaaggagctttttaacagatgcctccctgaggga
aggctggtcactgccaagatcctgtgcgtgaaccctgtgaagaacttgatagagctgtcg
ctccttccaagtgacactgggaagccggacgtgttctctgcttccccagaaccacctctt
ccaaatcaagaggagaggagaggaggggctgaggaaggcctgaagggagaagagaagaag
agccagaaaaggaaagagaggaacccgaaggggcaagaggggtccgggctgtccagccag
gagaagaaagagccccagaagtcacagaggggtgggcagggcaagcgggagcgcctggcg
tctgagagtgagcaggaagtagtgagcaagagaccaaagatttctgtggctccagaagat
gacgacggtggtgtggaagtgtactatcgggaaggagaggatgaggtggaggagctgaag
ctgcctccccggggaaagcagacaagacccacagaggtgccccggctgcgtctctcttca
ggctttgcttgggatgtggggctcgactctctaactccagccttgccgatccgagaagag
agctcagacagcgaggaggaagagcagctacagcaggccaagaagaagaagggcaagaag
gaaagggagctggagaggcagaaggcagagaaggagctgtcgcgcattgaggaggccctc
atggaccctgggcgacagcctgagtcggcggacgactttgaccggctggtgctgagctcg
cccagcagctccatcctctggctgcagtacatggctttccacctgcaggccaccgagatc
gagaaggcccgggccgtggccgagcgggccctcaagaccatctcgttcagagaggagcaa
gagaagctgaacgtgtgggtggccctgctgaacctggagaacatgtacggctcccaggag
tccctcactaaggtcttcgagcgcgctgtgcagtacaacgaacctctcaaggtcttcctg
catctggctgacatctacaccaagtcggagaagttcaaggaagctggtgagctgtacaac
cggatgctgaaacggttccggcaggagaaggctgtgtggatcaaatatggtgcctttgtt
ttggggaggagtcaggctggggccagtcaccgactgctgcagcgagccctggagtgcctg
cccaccaaggaacatgtggatgtgatcgtcaagtttgcccagctggagttccaacttgga
gatgcggagcgggctaaagccctttttgaaaacaccctgagcacctacccaaagcgcaca
gacgtctggtcagtctacatcgacatgaccatcaagcacggcagccagagagaagtcagg
gacatctttgagcgagtcattcacctgagcctggcccccaagaggatgaagttcttcttc
aagcgctacctggactatgagaagcagcacggcacagagaaggacgtgcaggctgtcaag
gcgaaggccttggagtacgtggaggccaagaactcagggctggaagactag
DBGET
integrated database retrieval system
