Apodemus sylvaticus (European woodmouse): 127686386
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Entry
127686386 CDS
T10613
Symbol
Col20a1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04974
Protein digestion and absorption
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
127686386
NCBI-ProteinID:
XP_052040512
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Position
5:164220700..164253973
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AA seq
1361 aa
AA seq
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MSLQGSYLRFCLWMFLGTTLALGQGQVSSRLRLAVLPEDQLQMKWRETEGSGLGYLVQVT
PMAGDLEQELILTTKTPKATVGGLSPSKSYTLQIFKLTDSGPVLLARKEFVIEDLKSQSL
GRGNWRLAGATLEPTSFPQRGPDYEKTSEPSIPFNSSRDLPILGVASKDQRKFKQGLGAQ
DSAQTATDQERQSHTAVSVGKQGKLGNSQFQCTPPTPADIIFLVDGSWSIGHNHFQQVKD
FLASIITHFAIGPDKVQVGLTQYSGDPQTEWDLNSFHTKEQVLAAVHHLLYKGGNTFTGL
ALTHVLEQNLKPAAGVRPEAAKVLILVTDGKSQDDVHTAARILKDQDIDVFVVGVKNVDE
AELKLLASQPLDITVHNVLDFPQLATLAPLLSRLICQKIQGRSPVKPAAGAQVLDPLPMP
TRLLLTHATSSSIHLSWTPALYPPLKYLIVWQPSRGGAPKEVVVEGPVSSMELRNLTSNT
EYLVSVLPVYESGVGKSLQGRATTAPLPPPGPLNLAAVTSRTLHVTWQPSAGATQYLVQY
LLATSAGEEQKREVHVRQPEVLLDGLEPGQDYEVSVKSLRGPEASEAQSIRARTSVLGSP
RYLSFSDVRYNSTCVSWEAQRPVRLVKVSYVSSDGSHSGQTQFPGNITSTTLGPLSSSTM
YTIRVTCFYLGGGSSVLTGHVTTQKAPNPSQLSVMELPGDAVKLSWLATALSGVLVYQIK
WIPLGEGKAHEISVPGTLGTAILHGLMKHVEYEITILAYYRDGTRSDPVSLRYTPSAASR
SPPSSLALSSETPNSLQVSWTPPSGHVLHYRLNYALASGSGLEKSISVPGTRSRVVLRDL
MSATKYRVLVSAVYGAGESMAVSATYRTAACPALHPDSSLSGFDLMVAFGLVAKEYASIR
GVAMEPSALGMAPTFTLFKDAQLMRRVSDIHPATLPPEHTIVFLVRLLPETPREAFALWQ
TMAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEVTFDLQDAKKIFFGSFHKVHIAVGHS
KVRLYVDCRKVAERPIGDAGILPTAGFITLGRLAKARGPRSSSATFQLQMLQIVCTDTWA
DKDRCCELPALRDGEMCPAFPSAFACSSETPGPPGPQGPPGLPGRNGTPGQQGHPGPKGE
PGPPGQTGPKGPGGQQGSPGTQGRAVQGPMGPPGAKGEKGEQGLPGLQGLSGQQGIPGKT
GLQGPKGMRGLEGPAGLPGPPGPRGFQGLAGTRGTNGERGPPGAVGPTGLPGSKGEPGEK
GEPQSLATIFQLVSQACESAIRTHVLKLNSFLHENARPPMPFMAETAKLGRPRSIDPGLH
EALLPGDWGHILHPEDQGEPVAISHISSPRLQEVQTPEPLE
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atgagcctccaaggctcctacctccgcttctgcctctggatgttcttgggcaccacgttg
gcactggggcagggacaagtaagtagccgtctaaggctggcagtactgcccgaggaccaa
ctgcagatgaagtggagggaaacagagggaagtggccttggctacttggtgcaggtgaca
cctatggcaggggacttggagcaggagctgatactgaccaccaagacccccaaggccact
gtgggtggcctgagcccttccaagagctacaccttgcagatcttcaagctcactgactct
gggcctgtcctgctggcacgaaaggagtttgtgattgaggatctgaagagccaatctttg
ggcagaggcaactggaggctggcaggagccaccctggagcctacctccttccctcagagg
ggcccagactatgagaaaacatctgagcccagcattcccttcaactcaagcagggacctg
cccattcttggagtggccagtaaggatcagaggaaattcaagcagggccttggagcacaa
gactctgctcagacagccacagatcaggagaggcagagccacactgcagtctcagtggga
aagcaagggaagctaggtaactcccagttccaatgcacacccccaacacctgctgatata
atcttcttggtggacgggtcctggagcatcggccacaaccatttccagcaggtgaaagac
ttcctggccagcatcatcacacattttgcaataggaccagataaagtccaagtaggtctg
acacagtacagtggagacccccagactgagtgggacctgaactccttccacaccaaggag
caagtgctagcagccgtacaccacctcctctacaagggaggaaacacattcacaggcctt
gccctaacccatgtgctggagcagaacctgaagccagcagcaggtgtccgtccagaggca
gccaaagtgttgattctggtgacagatggcaagtctcaggatgatgtgcacacagctgcc
aggatccttaaggatcaggacattgatgtctttgttgtgggtgtgaagaatgtcgatgag
gctgagctgaagctcctggcatcccaaccactggacatcactgtccacaacgtgctggac
ttccctcagctggccaccttagctcctttgctcagtcgtctcatttgccaaaaaattcag
ggcagaagcccagtcaaaccagcagcaggtgctcaggtcctggaccccctccccatgccc
accagactgctcctgacccatgctacctcgtccagtatccacctgtcttggactccagcc
ttatacccacccctcaagtatctaattgtgtggcagccttctaggggtggtgctcccaag
gaggtggtggtggaggggcctgtctcatccatggagcttagaaacctgacctccaacaca
gaatacttggtctctgtgcttcctgtctatgagagtggggttggcaagagcctgcaaggt
cgggcaaccacagcacccctgcctccacctgggcctctgaacctagctgcagtgacatcc
agaactctccatgtcacctggcagccctctgctggggctactcaatacttggtacagtac
ttgctggctacctccgctggggaggaacaaaagagagaggtacatgtgagacagcctgag
gtactgctggatggtctggagcctggccaggactatgaggtctcagtgaagagccttcgg
ggaccagaggccagcgaggcccaaagcatccgtgccaggacctctgtcctggggtcccca
agatacctaagtttctcagatgtgcgctacaactcaacctgtgtgtcctgggaagcccag
aggccagtgcgcctggtcaaagtcagctatgtctctagtgatggcagccactctgggcag
actcagtttcctggaaacattacttcaactactctgggcccactctcttcctctaccatg
tacaccatcagagtcacctgtttttaccttgggggtggttcctctgtgctgactggccat
gtgaccacacagaaagctcctaaccctagccagctgtctgtgatggagctcccgggagat
gcagtaaagctgtcatggttggccactgccttgtctggtgtgcttgtttatcagatcaag
tggatacccttgggagaggggaaggcccatgagatctctgtcccagggacccttggcaca
gccatcttgcatggcctgatgaagcatgtggaatatgagatcaccatccttgcctactac
agggacggcactcgcagcgaccccgtgtccctccgctacacaccctctgcagcaagcagg
agtcccccatccagcctggccttgtcttcagagacccccaacagcctgcaggtcagctgg
acaccaccaagtggccatgtcctccattatcggctcaactatgcactggcctcaggctct
ggactagagaaatcgatctctgtaccaggcaccaggagccgtgttgtgcttcgagatctg
atgtctgccaccaagtacagggtcctggtctcagctgtctatggagcaggggagagcatg
gcagtgtctgccacataccgcacagcagcctgcccagccctgcacccggacagttccctc
tcagggtttgacctgatggtggcctttggcctcgtggcaaaggagtatgcctctattcga
ggggtggccatggagccctcagccttgggtatggccccaaccttcactctcttcaaggat
gctcaactgatgcggcgggtcagtgacatccacccagcaaccctgccaccagaacacacc
attgtcttccttgtgcgcctactccctgagacaccccgggaagcctttgcactgtggcag
acaatggctgaagacttccagcccatccttggggttctgctggatgctggcagaaagtct
ctgacttacttcaaccatgattccagggcagccttacaggaggtcacctttgacctgcag
gatgcaaagaagatcttctttggaagcttccacaaggtacatatagctgtaggccactct
aaggtcagactttatgtggactgtcggaaggtggctgagcggcccattggggatgctggc
atcctgcccacagctggtttcatcacactagggaggctagccaaggccagagggccacgg
agcagctcagccacattccagctccagatgttgcaaatcgtgtgcactgatacttgggca
gacaaggacaggtgctgtgagcttccagcattgagggatggagagatgtgcccagccttc
ccttcagcttttgcctgctcatctgagactcctgggccaccagggcctcaaggccctccg
ggcctccctggaaggaatggcactccaggacagcagggacacccagggcccaagggagaa
ccaggcccacctggacaaacaggacccaaaggccctggaggtcagcaggggtcaccaggg
acccagggccgtgcagtccagggacccatggggccaccaggagccaaaggagagaagggg
gagcagggactcccaggcttgcagggcctctctggccaacaaggcatccctgggaaaact
ggcctacagggaccaaagggaatgagaggactggagggacctgctggcctgcctggacca
cctggcccaagggggttccagggcttggcagggaccaggggcaccaatggggagcgagga
cccccaggagctgtgggtcccacaggtctaccagggtccaaaggtgaaccaggagagaag
ggagagccacagtcccttgccaccatcttccagctggtgagccaggcctgcgagtcagcc
atacgtacacatgtcctgaagctgaattccttcctgcatgagaatgctcgtcccccaatg
cccttcatggcagagacagccaagctaggcagacccagatctatagatccaggattacac
gaggctctacttcctggagactggggacatatcctccaccctgaggatcaaggtgagcct
gtggctatcagccacataagcagccctagactgcaggaggtgcagaccccagaacccctg
gagtga
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