Apodemus sylvaticus (European woodmouse): 127687236
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Entry
127687236 CDS
T10613
Symbol
Hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04066
HIF-1 signaling pathway
asyl04137
Mitophagy - animal
asyl04140
Autophagy - animal
asyl04148
Efferocytosis
asyl04659
Th17 cell differentiation
asyl04919
Thyroid hormone signaling pathway
asyl05167
Kaposi sarcoma-associated herpesvirus infection
asyl05200
Pathways in cancer
asyl05205
Proteoglycans in cancer
asyl05208
Chemical carcinogenesis - reactive oxygen species
asyl05211
Renal cell carcinoma
asyl05230
Central carbon metabolism in cancer
asyl05231
Choline metabolism in cancer
asyl05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04066 HIF-1 signaling pathway
127687236 (Hif1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
127687236 (Hif1a)
04137 Mitophagy - animal
127687236 (Hif1a)
04148 Efferocytosis
127687236 (Hif1a)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
127687236 (Hif1a)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
127687236 (Hif1a)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
127687236 (Hif1a)
05205 Proteoglycans in cancer
127687236 (Hif1a)
05208 Chemical carcinogenesis - reactive oxygen species
127687236 (Hif1a)
05230 Central carbon metabolism in cancer
127687236 (Hif1a)
05231 Choline metabolism in cancer
127687236 (Hif1a)
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
127687236 (Hif1a)
09162 Cancer: specific types
05211 Renal cell carcinoma
127687236 (Hif1a)
09172 Infectious disease: viral
05167 Kaposi sarcoma-associated herpesvirus infection
127687236 (Hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asyl03000
]
127687236 (Hif1a)
Transcription factors [BR:
asyl03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
127687236 (Hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
DDRGK
HLH
Motif
Other DBs
NCBI-GeneID:
127687236
NCBI-ProteinID:
XP_052041621
LinkDB
All DBs
Position
6:complement(48506685..48550857)
Genome browser
AA seq
827 aa
AA seq
DB search
MEGAGGENEKKNRMSSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASV
MRLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKY
MGLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKEQNTQRSFFLRMKCTLTSRG
RTMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDS
KTFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQ
VTTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTES
VLKPVESSDMKMTQLFTKVESEDTSCLFDKLKKEPDALTLLAPAAGDTIISLDFGSDDTE
SEDQQLEDVPLYNDVMFPSSNEKLNINLAMSPLPASETPKPLRSSADPALNQEVALKLES
SPESLELSFTMPQIQDQPASPSDGSTRQSSPEPNSPSEYCFDVDSDMVNVFKLELVEKLF
AEDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESNSPSPPSVSTVTGFQ
QTQLQKPTITAAATTTAATATTTNESKTVTKDNIEDIKILIASPASTQGPQETTTPKASA
YSGTHSRTASPDRVGKRVIEQTDKAHPRSLNLSVTLNQRNTVPEEELNPKTVALQNAQRK
RKMEHDGSLFQAAGIGTLLQQPGDCAPTTSLSWKRVKGCISSEQNGVEQKTIILIPSDLA
CRLLGQSMDESGLPQLTSYDCEVNAPIQGSRNLLQGEELLRALDQVN
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccggcggcgagaacgagaagaaaaataggatgagttctgaacgtcgaaaa
gaaaagtctagagatgcagcaagatctcggcgaagcaaagagtctgaagttttttatgag
cttgctcatcagttgccacttccccacaatgtgagctcacatcttgataaagcttctgtc
atgagactcaccatcagttacttacgtgtgagaaaacttctggatgctggtgatctagac
attgaagatgaaatgaaagcacagatgaactgcttttatctgaaagccctggatggcttt
gttatggtgctaacagatgatggtgacatgatttacatttccgataacgtgaacaaatat
atggggttaactcagtttgaactaactggacacagtgtgtttgattttactcatccatgt
gaccatgaggaaatgagagaaatgcttacacacagaaatggcccagtgagaaaagggaaa
gagcaaaacacacagcggagcttttttctcagaatgaaatgtaccctgacaagccggggg
aggacgatgaacatcaagtcagcaacgtggaaggtgcttcactgcacaggccatattcat
gtctatgataccaacagtaaccaacctcagtgtgggtacaagaaaccacccatgacatgc
ttggtgctgatttgtgaacccattcctcatccgtcaaatattgaaattcctttagacagc
aagacatttctcagtcgacacagcctcgatatgaaattttcttactgtgatgaaagaatt
actgagttgatgggttatgagccagaagaacttttgggccgctcaatttatgaatattat
catgctttggactctgatcatctgaccaaaactcaccatgatatgtttactaaaggacaa
gtcaccacaggacagtacaggatgcttgccaaaagaggtggatatgtctgggttgaaact
caagctactgtcatatataatacgaagaactctcagccacagtgcattgtgtgtgtgaat
tatgttgtaagtggtattattcagcacgacttgattttctcccttcaacaaacagaatct
gtcctcaaaccagttgaatcttcagatatgaaaatgactcagctattcaccaaagttgaa
tcagaggatacaagctgcctttttgataagcttaagaaggagcctgatgctctcactctg
ctggctccagctgctggggacaccatcatatctctggattttggcagcgatgacacagaa
tctgaagatcaacaacttgaagatgttccattatataatgatgtaatgttcccctcttct
aatgaaaaattaaatataaatctggcaatgtccccattgcctgcctctgaaactccaaag
ccacttcgaagtagtgctgatcctgcactgaatcaagaggttgcattaaaattagagtcc
agtccagagtcactggaactttcttttaccatgcctcagattcaagatcagccagcaagt
ccttctgatggaagcactagacaaagttcacctgagcctaacagtcccagtgaatattgc
tttgatgtggatagtgatatggtcaatgtattcaagttggaactggtggaaaaactattt
gctgaagacacagaggcaaagaatccattttcaactcaggacactgatttagacttggag
atgttggctccctatattccaatggatgatgatttccagttacgttcctttgatcagttg
tcaccattagagagcaattctccaagccctccgagtgtgagcacagttacaggattccag
cagacccagttacagaaacctacaatcactgccgctgccaccacaactgccgctactgcc
accaccaccaatgaatcaaaaacagtgacaaaagacaatatagaagacattaaaatactg
attgcatctccagcttctacccaaggacctcaagaaacaaccactcctaaggcatcagca
tacagtggcactcacagtcggacagcctcaccagacagagtgggaaagagagtcatagaa
cagacagacaaagctcatccaaggagccttaacctgtctgtcactttgaatcaaagaaat
actgttcctgaggaagaattaaacccaaagacagtagctttgcagaatgctcagaggaag
cggaaaatggaacatgatggctccctttttcaagcagcaggaattggaacattattacag
cagccaggtgactgtgcacctactacgtcactttcttggaaacgagtgaaaggatgcata
tctagtgagcagaatggagtggagcaaaagacaattattttaataccctctgatttagca
tgtagactgctggggcaatcaatggatgagagtggattaccacagctgaccagttatgat
tgtgaagttaatgctcccatacaaggcagcaggaacctactgcagggtgaagaactactc
agagctttggatcaagttaactga
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