Apodemus sylvaticus (European woodmouse): 127688433
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Entry
127688433 CDS
T10613
Symbol
Trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
127688433 (Trim71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127688433 (Trim71)
04121 Ubiquitin system [BR:
asyl04121
]
127688433 (Trim71)
Enzymes [BR:
asyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127688433 (Trim71)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127688433 (Trim71)
Ubiquitin system [BR:
asyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
127688433 (Trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
zf-B_box_Trim66
zf-RING_UBOX
COG5_N
Motif
Other DBs
NCBI-GeneID:
127688433
NCBI-ProteinID:
XP_052043009
LinkDB
All DBs
Position
7:9592711..9646471
Genome browser
AA seq
855 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSSSSASSSSSQTSTSSAGGGGPGAAARRLHVLPC
LHAFCRPCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLD
AVVATADEPPPKNGRAGGGPGGAGGHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLL
RRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAAASAAQQ
LGLGPPFAGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTLGRHGGHSFAY
LQDALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKK
ALEDRECELLWKVEKIRQVKAKSLYLQVEKLRQNLSKLESTVSAVQQVLEEGRALDILLA
RDRMLAQVQELKAIRGFLQPQEDDRVMFTPPDQALYLALKSFGFVSSGAFAPLTKATGDG
IKRALQGKVASFTVMGYDHDGEPRLSGGDLMSVVVLGPDGNLFGAEVSDQQNGTYVVSYR
PQLEGEHLVSVTVYNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDGEGKLCRPWGVS
VDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDSSRRIVVADKD
NHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVF
LNKYGFEGSLWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQ
FLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAVTPDG
LIVVVDFGNNRILIF
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttccccgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tcgcccgcgccgctctcctccagctcgtccgcctcgtcgtcgtcctcgcagacgtccacg
tcgtcggcgggcggcggcggccccggggcggcggcgcggcgcctgcacgtcctgccctgc
ctgcacgccttctgccggccgtgtctcgaggcgcaccggctgcccgctccgggtggcgcc
ggccccgccgaggcgctgaagctgcgctgccctgtgtgtgaccagaaggtggtcctggcc
gaggcggcgggcatggacgcgctgccgtcgtccgccttcctgctcagcaacctgctggac
gccgtggtggccaccgccgacgagccgccgcccaagaacgggcgcgcgggcggcggcccc
gggggcgcgggcggccacagcaaccaccggcaccacgcgcaccacccggcccagcgcgcc
gccgctccagcgccgcagccgccgcccggcccggccgcctcccccggctcgctgctgctc
cgccggccgcacggctgcagctcctgcgacgagggcaacgccgcctcgtcgcgctgcctc
gactgccaggaacacctgtgcgacaactgtgtccgcgcgcaccagcgcgtacgcctcacc
aaggaccactacatcgagcgcggcccgccggggcctgcggccgcctccgcggcgcagcag
ctggggctcgggccgcccttcgcaggcgcgcccttctccatcctctcggtgttcccggag
cgcctcggcttctgccagcaccacgacgacgaggtactgcatctgtactgtgacacctgc
tctgtccccatctgcagagagtgcacgctgggccgccacggcggccacagcttcgcctac
ctccaggacgccctgcaggactcgcgggcactcaccatccagctgctggcagacgcccag
cagggccgccaggctatccagctgagcatcgagcaggcgcagacggtggcagagcaggtg
gagatgaaggcgaaggtggtccagtcggaggtcaaggctgtcacggctcgccacaagaag
gctttggaggatcgcgagtgtgagctgttgtggaaggtggagaagatccgtcaggtgaag
gcgaagtctctgtacctgcaggtggagaagctgcggcagaatctcagcaagctggagagc
accgtgagcgccgtccagcaggtcctggaagagggccgagcgctggacatcctgctggcc
cgagaccgcatgctggcccaggtgcaggagctcaaggccatccgcggcttcctgcagccc
caagaagatgatcgcgtcatgttcacgccccctgaccaggccctctaccttgccctcaag
tctttcggctttgttagcagtggggccttcgccccactcacgaaggctacaggagatggc
atcaagcgagcccttcaggggaaggtggcctccttcaccgtcatgggctatgaccacgat
ggggagccccgcctctcggggggtgacctgatgtccgttgtggtccttggccccgatggg
aacctgtttggtgcagaggtgagcgatcagcagaatgggacttacgtagtgagctacagg
ccccagctcgagggcgagcacctggtgtccgtgacagtgtacaaccagcatatagagaac
agccccttcaaggtagtggtcaagtcgggccgcagctacgtgggcatcgggctccccggc
ctgagctttggcagcgaaggcgacggtgagggcaagctctgcaggccctggggtgtgagc
gtcgataaggaggggtacatcatcgtggccgaccgcagcaataacaggatccaggtgttt
aagccctgtggctccttccaccacaagtttggtaccctaggttctcggcccgggcagttt
gaccggccagctggggtggcctgcgactcctcccgcaggatcgtagtggccgacaaagac
aatcatcgcattcagatcttcacctttgagggccagttccttcttaagtttggtgagaaa
ggaaccaagaacgggcagtttaactacccatgggatgtggcagtgaattctgagggcaag
atcctggtttcagacacccggaatcatcgcatccagctgtttggacctgacggggtcttc
ctgaataagtacggcttcgagggatctctctggaagcacttcgactctccacggggtgtg
gctttcaaccatgaaggtcacctggtagtcaccgatttcaacaaccatcggcttctggtt
attcaccctgattgccaatctgcccgcttcttgggctcggagggcaccggtaatgggcag
ttcttgcgaccacagggtgtggccgtggatcaggaagggcgaatcattgtagccgactcc
agaaatcaccgcgtgcagatgtttgaggccaacggtagcttcctgtgcaagtttggtgct
cagggcagtggcttcgggcagatggaccgcccctcaggtattgcggtcaccccggatgga
ttgatcgtcgtggtggactttggcaacaatcgaatcctcatcttctaa
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