Apodemus sylvaticus (European woodmouse): 127688828
Help
Entry
127688828 CDS
T10613
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03082
ATP-dependent chromatin remodeling
asyl04714
Thermogenesis
asyl05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
127688828 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
127688828 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
127688828 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asyl03021
]
127688828 (Smarca2)
03036 Chromosome and associated proteins [BR:
asyl03036
]
127688828 (Smarca2)
Transcription machinery [BR:
asyl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
127688828 (Smarca2)
Chromosome and associated proteins [BR:
asyl03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
127688828 (Smarca2)
Chromatin remodeling factors
BAF complex
127688828 (Smarca2)
PBAF complex
127688828 (Smarca2)
GBAF(ncBAF) complex
127688828 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
127688828
NCBI-ProteinID:
XP_052043785
LinkDB
All DBs
Position
1:complement(35529300..35696836)
Genome browser
AA seq
1599 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGTLIPGDLQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQPQQQPQQPQQQ
AQPQQPQQPQQQQQQQQQQQPALVSYNRPSGPGQELLLSGQSTPQKLSAPTPSGRPSPAP
PAATQTTATAMPGPSAQQPGPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQ
ARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALN
SKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAG
KIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQ
QTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQMS
DLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEEES
GRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISER
VEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR
LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYE
YIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPEL
WALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLK
KEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQ
LRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLL
FCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGL
GLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYK
LNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFD
LFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQR
RDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRP
PAEKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGNSSGRQLSEVFIQLP
SRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYED
SIVLQSVFKSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDT
GKGKKRPNRGKAKPVVSDFDSDEEQEENEQSEASGTDNE
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgtctacacccacagacccagctgcaatgccccatcctgggccctccccggggcccgga
ccctctcctggaccaattctggggcctagtccaggaccagggccatccccaggttctgtg
cacagcatgatgggtcccagtcctggacctcccagtgtctcacatcccatgtcaacgatg
ggctctgcagacttcccacaggaaggcatgcatcaattgcataagcctatggatggcata
catgacaaggggattgtggaagatgtccactgtggatccatgaagggcaccagcatgcgc
ccaccacaccctggaatgggccctccacagagcccaatggatcagcacagccaaggttat
atgtcaccacatccgtctcctttgggagccccggagcacgtctccagccctatatctgga
ggaggcccaaccccaccccagatgccgccaagccagccagggacactcatcccaggagat
ctgcaggccatgaaccagcctaaccgaggtccctcgcctttcagtcctgtacagttgcat
cagctccgagctcagattttagcttacaaaatgttggccaggggccagcctctccctgaa
accctgcagcttgcagtccagggaaaacggaccttgcctggcatgcagcagcaacagcag
cagcagcagcagcaacagcaacagcagccccagcagcaaccacagcagcctcagcagcag
gcgcagccacagcagccacagcagccacaacagcagcagcagcagcagcaacagcaacag
ccagctcttgttagctacaatagaccatctggccccgggcaggagctgctgctgagtggt
cagagcaccccacagaagctgtcagcacccacacccagcggccgaccttcacctgcaccc
ccagccgccacccagaccacggccacagcaatgcctgggccctctgcgcagcagcccggc
ccagggcagccttctccagtcctgcagctgcaacagaaacagagccgcatcagcccgatc
cagaaaccacaaggcctggaccccgtggagatcctgcaggaacgagagtacagacttcag
gctcgcatagctcataggatacaagaactggaaagtctgcctggctccttgccaccagat
ttacgcaccaaagcaactgtggaactgaaagcgcttcgcttgctcaacttccaacgtcag
ctgagacaggaggtggtggcctgcatgcgaagggacaccaccctggagacagccctcaac
tccaaagcatacaagcggagcaagcgccagaccctgcgagaggcgcgtatgacagagaaa
ctggagaagcagcagaagatagagcaagagaggaaacgccggcagaagcaccaggaatac
ctgaacagcattttgcagcatgcaaaagattttaaggaatatcaccggtctgtggctggg
aagatccagaagctgtccaaagcagtggcgacttggcacgctaacaccgaaagggagcag
aagaaggagacggagcggattgagaaggagagaatgcggaggctgatggctgaagatgaa
gagggctacaggaagctcattgaccaaaagaaagacagacgtctcgcctacctattgcag
cagactgatgagtatgttgccaatctgactaacctggtttgggagcacaagcaggcccaa
gcagccaaagaaaagaagaagaggaggaggaggaagaagaaggctgaagagaatgcagag
ggaggggagcctgccctgggaccagatggagagccaatagatgaaagcagccagatgagc
gacctgcctgtcaaagtgacacacacagaaactggcaaggtcctctttggaccagaagca
cccaaagcaagtcagctggatgcctggctggagatgaatcctggttacgaagttgcaccc
agatctgacagtgaagagagtgaatctgactacgaggaagaggatgaagaagaggagtct
ggtaggcaggagacagaggagaagatcctgctggatccaaacagcgaagaagtttctgaa
aaggacgccaagcagatcatcgagactgcgaaacaggacgtggacgatgaatacagcatg
cagtacagtgccagaggctcccagtcctactacacagtggctcacgctatctccgagagg
gtggagaagcagtctgccctcctcattaacggcaccctaaagcattaccagctccagggc
ctggaatggatggtttccctgtataataacaatctgaacggaatcttagctgacgaaatg
gggctaggcaagaccatccagaccattgccctcatcacgtatctgatggagcacaaaagg
ctcaatgggccctacctcatcatcgtccccctctcgactttgtctaactggacatatgaa
tttgacaaatgggctccttctgtggtgaaaatttcttacaagggcacccctgccatgcga
cgctccctcgttccccagctacggagtggcaaattcaatgtcctcctgactacttatgag
tacattataaaagacaagcacattcttgcaaagattcggtggaaatacatgatcgtggac
gaaggccaccgaatgaagaatcatcactgcaagctgacccaggtcctgaacacacactat
gtggcccccagaaggatccttctgactgggaccccgctgcagaataagcttccggaactc
tgggccctcctcaatttcctccttcctacgatcttcaagagttgcagcacatttgagcag
tggtttaatgctccgttcgccatgaccggcgaaagggtggatctgaatgaagaagaaacg
attttgatcatcaggcgtctgcacaaggtgttgagaccttttctactgaggaggctgaag
aaagaggttgagtctcagcttccagaaaaggttgaatatgtgatcaagtgtgacatgtca
gctctgcagaagattctgtaccgtcatatgcaagccaaggggatcctcctcacggacggg
tctgagaaggataagaaggggaaaggcggtgccaagacgcttatgaacaccatcatgcag
ctgagaaaaatctgcaaccacccgtacatgtttcagcacatagaggaatcctttgctgaa
cacctgggctattcgaatggggtcatcaatggggctgagctgtaccgggcctcgggcaag
tttgagctgcttgaccgtattctgcccaaattgcgagcgactaaccaccgcgtgctgctt
ttctgccagatgacgtcactcatgaccatcatggaggattactttgcttttcggaacttc
ctttacctgcgccttgacggcaccaccaagtctgaagatcgcgctgctttgctgaagaaa
ttcaatgaacctgggtcccagtatttcattttcttgctgagcacgagagctgggggcctg
ggcttaaatcttcaggctgcagacacggtggtcatctttgacagtgactggaatcctcat
caggatctgcaggcccaagaccgagctcaccgcattggccaacaaaatgaggtccgggtg
ctgaggctgtgtaccgtcaacagtgtggaggagaagattctcgcggctgccaagtacaag
ctgaacgtggatcagaaggttatccaggcaggcatgtttgaccagaagtcatccagccac
gagcggagggcgttcctgcaggccattctggagcatgaagaagagaatgaggaagaagat
gaggtgccagacgacgagaccctgaaccagatgattgctcgccgggaagaagagtttgat
ctttttatgcgcatggacatggaccggcggagggaggatgccaggaacccgaagcgcaaa
cctcgcctgatggaagaagatgaactgccctcctggattattaaggatgacgctgaagtg
gaaaggctcacctgtgaggaagaggaggagaagatctttgggaggggttctcgccaacgc
cgggatgtggactacagcgatgccctcaccgagaagcaatggctcagggccatcgaagac
ggcaatttggaagaaatggaagaggaggtacggcttaagaagagaaagagacgaagaaat
gtggataaagatcccgtgaaggaagatgtggaaaaggcgaagaaaagaagaggtcgccct
ccggcggagaagttgtcaccaaatcccccaaaactaacgaagcagatgaacgccatcatc
gataccgtgataaactacaaagacaggtgtaacgtggagaaggtgccctgtaattctcag
ttggaaatagaaggaaacagttcagggcgacagctcagtgaagtcttcattcagttacct
tccaggaaagagttaccagaatactatgaattaattaggaagccagtggatttcaaaaag
ataaaggaacgaatccgtaatcataagtaccggagcctgggagacctggagaaagatgtc
atgcttctctgtcacaacgcacagacattcaacttggaaggatcccagatctatgaagac
tccattgtcctacagtcagtgtttaagagtgctcggcagaaaattgccaaagaagaagag
agtgaggaagaaagcaatgaagaagaggaagaagatgatgaagaggaatcagagtcagag
gcaaaatctgtgaaggtgaaaatcaaactgaataaaaaggaagagaaaggccgggacaca
gggaagggcaagaagcggccaaaccgaggcaaagccaaacctgtcgtgagcgattttgac
agcgacgaggaacaggaggaaaatgaacagtcagaagcaagtggaactgacaacgagtga
DBGET
integrated database retrieval system
