Apodemus sylvaticus (European woodmouse): 127690289
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Entry
127690289 CDS
T10613
Symbol
Prpf19
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03040
Spliceosome
asyl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127690289 (Prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
127690289 (Prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asyl03041
]
127690289 (Prpf19)
04121 Ubiquitin system [BR:
asyl04121
]
127690289 (Prpf19)
03400 DNA repair and recombination proteins [BR:
asyl03400
]
127690289 (Prpf19)
Enzymes [BR:
asyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
127690289 (Prpf19)
Spliceosome [BR:
asyl03041
]
Complex B
Other components
Prp19 complex
127690289 (Prpf19)
Complex C
Prp19-CDC5 complex
127690289 (Prpf19)
Ubiquitin system [BR:
asyl04121
]
Ubiquitin ligases (E3)
U-box type E3
127690289 (Prpf19)
DNA repair and recombination proteins [BR:
asyl03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
127690289 (Prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR3_2nd
Prp19
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR41
NBCH_WD40
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_Vps41
U-box
Beta-prop_IFT122_1st
Beta-prop_DCAF4
PEP5_VPS11_N
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_ACSF4
eIF2A
Cytochrom_D1
Beta-prop_Nup120_160
PROPPIN
RMC1_N
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
zf-Nse
Beta-prop_VPS8
DUF1830
Motif
Other DBs
NCBI-GeneID:
127690289
NCBI-ProteinID:
XP_052045737
LinkDB
All DBs
Position
1:complement(52454353..52465050)
Genome browser
AA seq
523 aa
AA seq
DB search
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWGWPNSPALPQSSQWPTLSQDAVMLHSFTLRQQLQTTRQ
ELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGEPMD
LGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHSASI
PGILALDLCPSDTNKVLTGGADKNVVVFDKSTEQILATLKGHTKKVTSVVFHPSQELVFS
ASPDATIRIWSVPNTSCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTGRVL
TKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFS
ENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQIYI
CKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgatctgctcgatctccaatgaagtgccagagcacccgtgcgtgtcccctgtc
tctaatcatgtgtatgagcgacgactcattgagaagtacattgcagagaatggcacagat
cctatcaacaaccagcctctctctgaggagcagctcattgacatcaaagttgctcaccca
atccggcccaagcctccctctgccaccagcatcccagccattctgaaagccttgcaggat
gagtggggttggccgaattctccggctctcccccagtcctcacagtggcctaccctctcc
caggatgcagtcatgctgcacagcttcactcttcgccagcaactgcagaccacccgccag
gagctgtcccatgctctgtaccagcacgatgctgcctgccgagtcattgcccggctcacc
aaggaagtcactgctgctcgagaagctctggctactctgaaaccacaggctggtcttatt
gtacctcaggctgtgccaagctcacagcccagtgttgtgggtgcaggagagcccatggat
ttgggtgaacttgtgggaatgacccctgagattatccagaagcttcaagacaaggccact
gtgctaaccacggagcgtaagaagagagggaagactgtccctgaggaactggtgaaacct
gaagagctcagcaagtaccggcaggtggcttcccatgtggggctgcacagtgccagcatc
cctgggatccttgctctggacctgtgtccttcagacaccaacaaggttctcactggtggg
gcagataaaaatgttgttgtctttgataagagtactgagcaaatcctggccactctcaaa
ggccataccaagaaggtcaccagtgtggtgtttcatccttctcaggaactggtattttct
gcgtcccctgatgctactatcaggatttggtcggtcccaaacacttcttgtgtccaggtt
gttcgggcccatgagagtgcggtgacaggcctcagtctccatgctactggagactatctc
ctgagctcctctgatgatcagtactgggccttctctgacatccagacagggcgtgtgctc
actaaggtgacggatgagacttctggctgctcccttacctgtgcacagttccaccctgat
gggctcatctttggaacaggaaccatggactcccagatcaagatctgggacttgaaggag
cgtaccaatgtggccaacttccctggccactctggccccattaccagcatcgccttctct
gagaatgggtactacttggccacggcagctgatgactcctcagttaagctctgggactta
cgcaagttgaagaacttcaagacattgcagctggacaacaactttgaggtgaagtcccta
atctttgaccagagcggtacctacctggcgctggggggtaccgatgtccagatctacatc
tgcaaacagtggacagaaattcttcactttacagagcatagtggcctgaccactggggtg
gcctttgggcaccacgccaagttcatcgcttcaaccggcatggacaggagcctcaaattc
tacagtctgtag
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integrated database retrieval system
