Apodemus sylvaticus (European woodmouse): 127691229
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Entry
127691229 CDS
T10613
Symbol
Pcdh9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
127691229 (Pcdh9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
asyl01009
]
127691229 (Pcdh9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asyl04515
]
127691229 (Pcdh9)
Protein phosphatases and associated proteins [BR:
asyl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
127691229 (Pcdh9)
Cell adhesion molecules [BR:
asyl04515
]
Cadherins
Protocadherins
127691229 (Pcdh9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
MAP17
RCR
EphA2_TM
V_ATPase_I
DUF6249
7tm_3
Motif
Other DBs
NCBI-GeneID:
127691229
NCBI-ProteinID:
XP_052046787
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All DBs
Position
8:32518530..33400125
Genome browser
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFNREEQERFIF
TVTARDSGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDED
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPALTDVGLHRLVVNISDLGYPKALHTLVLVFLYVNDTAGN
TSYIYDLIRRTMETPLDRNIGDSGQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKND
NIPVIHQKCPGSTGFHIRENEESHSESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWIKKDKLVNGHTLTRAWKEDTNRNQFNDRKQYGS
NEGHFNAGSHMADIPLANLKSYKQAGGTIESPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttgaggctggattcc
gcaatagctcaagaacttatttacactattagagaggaattgcctgagaatgtgcccata
ggaaacataccaaaggatctgaatatttctcacatcaacgctgccacaggcaccagtgcc
agccttgtctacagactggtttctaaagctggggatgcccctctagtgaaagtatccagt
agcactggggagattttcacaacctccaacagaatagacagagagaaactctgtgccgga
gcttcttacgctgaggagaacgagtgtttctttgaacttgaggtggtgatcctccccaat
gactttttcaggctgatcaaaatcaagatcattgtcaaggataccaatgataatgccccc
atgtttccgtctcccgttatcaatatttccatcccagagaacactttgatcaacagccgc
ttcccaatcccatcagccacagaccctgacacaggcttcaatggggtacagcattatgaa
ttgctaaatggacagagtgtttttggactggatattgtggaaactccagagggagaaaag
tggccgcaattgattgttcagcagaacttggacagagaacaaaaagacacctatgtgatg
aaaatcaaagtggaggatgggggcacgccacagaaatccagcacagccatactacaggtc
acagtaagtgatgtcaatgacaacaggccagtgtttaaagagggtcaagtagaagtgcat
attccagagaatgctcctgtggggacctctgtaattcagctccatgctactgatgcagac
ataggcagtaatgctgaaatccggtacatttttggtgcccaggtcgcccctgcaaccaaa
agactttttgctttaaataacacaactgggctgataacagttcagaggtccttagatagg
gaagagacagccattcacaaagtgacagtgctggctagtgacggcagctccactcctgcc
agagccaccgttacaatcaatgtcacagatgtaaatgacaaccctccgaacatagacctc
aggtacatcataagtcccatcaatggcacagtgtacctctcagagaaagatccagtcaat
acaaagattgccctaattacagtttcagataaggacacagacgtgaatggcaaagtgata
tgttttattgagagagaggtcccgtttcatctgaaggcagtatatgacaaccagtatctg
ctagagacctcttctctgctggactatgagggcaccaaagaattcagctttaaaatcgtt
gcctctgattctgggaagcccagtttgaatcagactgccctggtaagggttaaacttgag
gatgaaaatgacaacccaccaattttcaaccagcctgtgattgagctgtcagtttctgaa
aacaaccgacgtgggttatacttaacaactattagtgctacagatgaagacagtgggaaa
aacgcagacattgtttatcagcttggaccgaatgcctccttctttgatctggacagaaag
acaggagttctgacagcctcccgagtctttaacagggaggaacaagagcggttcattttt
acagtaactgccagggacagcgggacccctcccctccagagccaagcagcagtgatcgtc
acagttctggatgagaatgacaatagccccaagtttactcataatcattttcagtttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtaatcacagtgacagatgaagac
gctggagagaataaagctgtgactctttccattctaaatgacaatgaaaattttgtgttg
gatccctattcgggagtcataaagtccaatgtctcctttgatagagagcaacagagttca
tacacgtttgatgtcaaagccactgacggagggcagccaccacgctcctctactgcaaaa
gtaacgatcaatgtcatggatgtgaatgacaatagtccagtcgtcatttctccaccatcc
aacacctcttttaagttggtgcccctctctgccattcctggttctgtggttgctgaagtg
tttgcggtggatattgacaccggaatgaatgcagaacttaagtatactatagtgagtggg
aacaacaaaggattgtttcgaattgatccagtaacgggcaatatcaccttagaggagaag
ccagcactcactgacgtgggcctgcaccgtctcgtggtcaacataagtgacctagggtac
cccaaggctttgcacactcttgtgctggtatttctctacgtgaacgacactgccggaaac
acgtcctacatatatgacttgattcgtaggactatggagaccccgctggacaggaacata
ggagatagtggtcaaccttatcaaaacgaggactatctcaccatcatgatcgccatcgtt
gctggggccatggtggtcattgttgtgatctttgtcacagtgctggtgcgctgtcgccat
gcgtcgaggttcaaggccgctcagaggagcaaacaaggtgctgaatggatgtccccaaac
caggagaataaacaaaacaagaaaaagaaacggaagaaaagaaagtcgcccaagagttct
cttttgaactttgttactatcgaagagtccaagcccgatgatgcagttcacgaacctatc
aatgggaccataagcctgcctgccgagctcgaggaacagagtataggaagatttgactgg
ggcccagcccctccaacaaccttcaagcctaacagccctgacctggccaagcactacaaa
tccgcctcaccacagcctgctttccatctcaaacctgacactccagtttccgtgaaaaag
caccacgtcattcaagaactccccttggacaacacctttgttgggggctgcgacaccctt
tccaaacgctcctccactagctcagatcacttcagtgcctcagagtgcagctcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaactcacacagcaaaaatgac
aatattcctgtcatacatcagaaatgccctggctctactggtttccacattcgagagaat
gaagaaagtcattctgagtctcagcgccgtgttacctttcacctcccggatggctcccag
gaaagctgcagtgacagtggtctgggagaccacgagccggtgggtagtggaaccctgatc
tcacaccctcttcctctggttcagccacaggacgaattctacgaccaggcctctccggac
aagaggaccgaagcagatggcaactcggaccccaattctgatggacctctaggtccccga
gggttagctgaagctacagagatgtgcactcaagagtgtctggttttgggtcactctgat
aattgctggatgcctcctggcttgggtccataccaacaccctaaatctcctttgtcaacc
tttgcaccccagaaagaatggatcaagaaagacaagctcgtgaatgggcacaccctgaca
agagcttggaaagaagacaccaacaggaaccaattcaatgaccgtaagcagtatggctcc
aatgaaggccatttcaacgctggcagccacatggcagacattcctctggcaaatctgaag
tcctataagcaagcaggaggcacgattgagagtcctaaggagcaccaactttaa
DBGET
integrated database retrieval system
