Apodemus sylvaticus (European woodmouse): 127693077
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Entry
127693077 CDS
T10613
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1
KO
K12828
splicing factor 3B subunit 1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127693077 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asyl03041
]
127693077 (Sf3b1)
03036 Chromosome and associated proteins [BR:
asyl03036
]
127693077 (Sf3b1)
Spliceosome [BR:
asyl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
127693077 (Sf3b1)
Complex B
127693077 (Sf3b1)
Complex C
U2 SnRNP specific factors
127693077 (Sf3b1)
Chromosome and associated proteins [BR:
asyl03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
127693077 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
127693077
NCBI-ProteinID:
XP_052049756
LinkDB
All DBs
Position
9:58228557..58268062
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatatcgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagcccaaggagtgggccttgattctacaggttattatgac
caagaaatttatggtggaagtgatagcagatttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatccacgagcttgcttggtcagaag
aagcctggataccatgcccccgtggcattgcttaatgatataccacagtcaacagaacag
tatgatccatttgctgaacatcgccctccaaagattgcagaccgggaagatgaatacaaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacctacatggatgttatgcgagaacaacat
ttgactaaggaagagagagaaattaggcaacaactagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacgaaaacggcgctgg
gatcaaacagctgatcagactcctggtgcgactcccaaaaagctatcaagttgggatcag
gcagagacccctgggcataccccttctttaagatgggatgagacaccgggtcgtgcaaaa
ggaagtgaaacacctggagccaccccaggctcaaaaatatgggatcctacacctagtcat
acacccgcgggagctgctactcctggacgaggcgatacaccgggccatgcaaccccgggc
catggtggtgcgacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagag
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gactctattggtgaaacaccaactcctggagcaagtaaaagaaagtctcgttgggatgaa
acgccagctagtcagatgggtggcagcactcctgttctgactccaggaaaaacaccaatt
ggcacaccagccatgaacatggctacccccactccaggtcacataatgagcatgactcct
gaacagcttcaggcttggcgatgggagagagaaattgatgagcgaaaccgcccactttct
gatgaagaattagatgctatgttcccagaaggatataaggtacttccccctccagctggt
tatgttcctatccgaactccagctcgaaagctgacagcaactcccacacctttgggcggc
atgactggtttccatatgcaaactgaagaccgaactatgaaaagtgtcaatgatcagcca
tctggaaatcttccatttttaaaacctgatgacattcagtactttgataagctattggtt
gatgtagatgagtcaacacttagtccagaagagcaaaaagaaagaaaaataatgaagttg
cttttaaaaattaagaatggtacacctccaatgagaaaggctgccttacgtcagattact
gataaagctcgagaatttggagctggaccactgtttaaccagattcttcctctcttgatg
tcccctacgcttgaggatcaagagcgacatttacttgtgaaagttattgatagaatattg
tataaacttgatgatttggtgcggccatatgtgcacaagattcttgtggttatcgagcca
ctgttgattgatgaagattactatgctagagtggaaggccgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttctaccatgagacctgatatagacaacatg
gatgaatatgtccgaaacacaacagctagagcttttgctgtcgtggcctctgccctgggc
attccttctttattgcctttcttaaaagccgtgtgcaaaagcaagaagtcttggcaagcg
aggcacactggtattaagattgtacaacagatagccattctcatgggctgtgctatcttg
ccacatctcagaagtttagttgaaattattgaacatggtctcgtggatgagcagcagaaa
gttcggaccatcagtgctctggccattgctgctttggctgaggcagcaactccttatggt
attgagtcttttgattccgtgctcaagcccctatggaagggtatccgccaacacagagga
aagggtctggctgctttcctgaaggctattgggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaatccttattcgagaattccagtctcct
gatgaagaaatgaagaaaattgttttgaaggtggtgaaacagtgttgtggaactgatggt
gtagaagcaaactacattaaaacggagattcttccacctttctttaaacacttctggcaa
cacagaatggctttggatagaagaaattaccgacagttagttgatacaactgtggagttg
gcaaacaaagtaggtgccgcggagatcatttctaggattgttgatgatctgaaggatgag
gctgagcagtacaggaaaatggtgatggagaccattgagaaaatcatgggcaatctcggc
gcagcagacattgaccataaactcgaggaacagctgattgatggtattctctatgctttc
caggaacaaactacagaggattcagtaatgttgaatggctttggcacagtagttaatgct
cttggcaaacgagtcaaaccatatttgcctcagatctgtggtacagttttatggcgttta
aataataaatcagcaaaagttaggcaacaagcagctgacttgatttctcgaactgctgtt
gttatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgctgtacgaa
tatttgggtgaagagtaccctgaagtgttgggcagcattcttggagcactgaaggccatt
gtaaacgtaataggtatgcataaaatgacaccaccaattaaagatctcctgcctagactc
acccccatcttaaagaacagacatgaaaaagtacaagagaattgtattgatcttgttgga
cgcattgctgacaggggagctgaatatgtatctgcaagagagtggatgaggatttgcttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgaagagctaccgtcaataca
tttggttatattgcaaaggctattggccctcacgatgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagggtttgtacgaccgtagcaatagccattgttgct
gaaacatgctcacccttcacagtactccctgccttaatgaatgaatacagagttcctgag
cttaatgttcaaaatggagtgttaaaatcactctccttcttgtttgagtatatcggtgaa
atggggaaagactacatctacgctgtaacgcctctacttgaggatgcattgatggatagg
gaccttgtacacagacagacagctagtgcagtggtacaacacatgtcacttggtgtttat
ggatttggctgtgaagattctttgaatcacttactgaactatgtgtggcctaatgtgttc
gagacatctccccatgtaatccaggcagttatgggagctctggagggcctgagggttgct
attggaccatgcagaatgttgcagtattgcttacagggtctgtttcacccagctcggaaa
gtcagagatgtatattggaaaatttacaactccatctacattggctcccaggatgctctc
atagcacattacccaagaatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
