Apodemus sylvaticus (European woodmouse): 127693451
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Entry
127693451 CDS
T10613
Symbol
Ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
asyl03009
]
127693451 (Ighmbp2)
03012 Translation factors [BR:
asyl03012
]
127693451 (Ighmbp2)
Enzymes [BR:
asyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
127693451 (Ighmbp2)
5.6.2.5 RNA 5'-3' helicase
127693451 (Ighmbp2)
Ribosome biogenesis [BR:
asyl03009
]
Eukaryotic type
Other ribosome biogenesis factors
127693451 (Ighmbp2)
Translation factors [BR:
asyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
127693451 (Ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
DEAD
nSTAND3
AAA_16
Helicase_RecD
AAA_22
SLFN-g3_helicase
UvrD-helicase
AAA_25
IstB_IS21
AAA
PhoH
Flavi_DEAD
DnaB_C
VWA_2
Zot
ABC_tran
UvrD_C_2
DUF444
T2SSE
CheR_N
NTPase_1
NPHP3_N
HSA
DAP3
Motif
Other DBs
NCBI-GeneID:
127693451
NCBI-ProteinID:
XP_052050260
LinkDB
All DBs
Position
1:59642114..59663870
Genome browser
AA seq
993 aa
AA seq
DB search
MASSTVESFVAQQLQLLELERDAEVEERRTWQEHSSLKELQSRGVCLLKLQVSSQRTGLY
GQRLVTLEPRKFGPAMVFPSNSFTSGDIVGLYDTNENSQLATGVLTHITQKSVTVAFDES
HDFQLNLDRENTYRLLKLANDVTYKRLKKALMTLKKCHSGPASALIDVLLGGSTPSPTRE
TAPLTFYNTTLDPSQKEAVSFALAQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC
APSNIAVDNLVERLALCKKRILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRDID
QVFGKNKKTQDKREKSNFQNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASPDGPL
KLLPEDYFDVVVVDECAQALEASCWIPLLKAPKCILAGDHKQLPPTTVSHKAALAGLSRS
LMERLAEKHGAAVVRMLAVQYRMHQAISRWASEAMYRGQLTAHPSVAGHLLKDLPGVADT
EATNVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHVQALVDAGVQAGDIAVIAPY
NLQVDLLRQSLSNKHPELEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINVAV
TRARRHVAVICDSHTVNNHAFLKTLVDYFTEHGEVRTAFEYLDDIVPENYTHEGSRGHSR
VPKPKCPGTSVRKPASGQESSQEARTAPGHGRRKPGEKPPDSQVQSQHSSSANGSDRTGG
TDRTEHFRAMIEEFVASTEAQLEFPTSLSSHDRLRVHQLAEEFGLRHDSTGEGKARRITV
SRRSPAASASGCVAPQPPSPPSPAQAEPEPPGEQPIGQPHDSTQLDLKALHLERLQRQQD
CQAQTAKGQPGVGSRPQKAPQKKKKKEPKGPAMALPCEEDFDALVSAVVKADNTCSFSKC
SASTTTLGQFCMHCSRRYCLSHHLPEIHGCGEKARAHARQRISREGVLYAGSGTKDRALD
PAKRAQLQRRLDKRLGELSSQRTSKRKEKERGT
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtccaccgtggagagtttcgtggcccagcagctacagctgctggagctagag
cgggacgccgaggtggaggagcgcaggacctggcaggagcacagttctctgaaagagctt
cagagccgaggggtgtgtttgctgaagctccaggtatccagtcagcgcaccgggctgtat
ggacagcggctggtcaccttggagcccaggaaatttggacctgcgatggtgtttcccagc
aatagcttcacctctggtgatattgtgggtctgtatgatactaatgaaaacagccaactg
gccactggggtcctgacccacattacccaaaagtcagtcacagtggcctttgatgagtcc
catgatttccagttgaacttggacagagagaatacctacagactgctgaagcttgccaac
gatgtcacctacaaacgcctgaaaaaagcactgatgacactgaagaagtgccactccggg
ccggcatctgcactcatagatgtcctgttgggtggctccacccccagtcccactagggaa
acagccccgctcactttctacaacacgaccctggacccttcccagaaagaagctgtgtct
tttgcgctggcccagaaagaacttgccatcatccacgggcctcctggcactgggaaaact
acaactgtcgtggaaattatccttcaagctgtgaagcaaggcttaaaggttctgtgctgt
gctccctccaacatcgctgtggacaacctggtggagcgtctggctctgtgcaagaagagg
attctgcgcctgggtcaccctgcccgcctcctggagtccgttcagcagcactcactggat
gcagtgctggcacgcagtgacaacgctcagattgttgctgacatcagaagggacattgac
caggtctttggcaagaacaaaaagacccaggataagagggagaaaagtaattttcaaaat
gaaattaagctgctaaggaaggaactgaaggagagggaagaggcagccatagttcagagc
ctcacggcggcagatgtggtcctggccaccaacacaggtgcatctcctgacggccctctg
aagctgctgccggaagactactttgatgtggtggtggtggacgagtgcgcccaggcccta
gaagccagctgctggatccccctgctgaaggccccgaagtgcatcctagctggagaccac
aaacagctgccccccaccacggtctctcacaaggcagcactggccgggctgtcccgcagc
ctgatggagcgcctggcagagaaacacggtgctgctgtggtaaggatgctggcggtgcag
taccggatgcaccaggccatctcgcgctgggcctcggaggccatgtaccgcgggcagctc
acagcccacccctctgtggcagggcacctcctgaaggacctcccaggtgtggctgacaca
gaagcgacaaatgtccccctgctgctcatagacacagctggctgtgggctactggagctg
gaggaggaggacagccagtccaagggaaacccgggcgaagtgcgcctcgtcactttgcac
gtccaggctctggtggatgctggggtccaggcaggtgacattgccgtcatcgcgccctac
aaccttcaggtggatctcctcagacagagcctctccaacaagcaccctgagctggagatt
aagtctgttgatggcttccaaggccgagagaaggaggctgtgatcctgacctttgtcagg
tccaataggaaaggtgaagttggttttctggctgaggacaggcggatcaatgttgctgtc
acccgtgcccggcggcatgtggcagtaatctgtgattcccacactgtcaataatcatgcc
tttttgaagaccctggtggattatttcacagagcatggggaggtacgcacagcctttgag
tacctggacgacattgtccctgagaactacacccatgagggctcccggggccacagccgt
gtccccaaacccaagtgcccgggcacctctgtcaggaagcctgccagtggtcaggagagt
agccaggaggccaggacagcccctggacacgggcgcaggaagccaggcgagaagccccca
gactctcaagtccagtcccagcacagctccagtgcaaatggctctgacagaactggaggc
acagaccggacagagcacttcagggctatgattgaggagtttgtggccagcacggaggcc
cagttggagtttcccacatccctgagctcccatgacaggctgcgagtccaccagctagct
gaggagttcggcctgaggcacgacagcaccggagaggggaaggcacggcgaatcacagtg
agcaggaggagccctgctgcttctgcttctggctgtgtagccccacagcctccctcaccg
ccgagccccgcacaggctgagcctgagccaccgggagaacagcctatcgggcagccacat
gactccacacagctggatctgaaggcactgcatctggagaggctgcagcggcagcaagac
tgccaggcccagacagccaagggtcagccaggcgtgggttcgaggccacagaaggctcct
cagaagaaaaagaaaaaagaaccaaaaggtccagccatggctctgccctgtgaggaggac
ttcgatgccctagtgtcggctgtggtgaaggctgacaacacctgcagcttctccaagtgc
tcggccagcaccaccactctgggccagttctgtatgcactgtagccgccgctactgcctc
agccaccatctgccggagatccatggctgtggtgaaaaggctcgtgcccacgcccgacag
aggattagccgggaaggagtgctctacgcaggcagcgggaccaaggacagggccctggac
ccggccaagagggcccagctgcagcggaggctggacaagagactgggcgagctcagcagc
cagaggacaagcaagaggaaggagaaggagagggggacgtga
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