Apodemus sylvaticus (European woodmouse): 127693628
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Entry
127693628 CDS
T10613
Symbol
Ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
asyl Apodemus sylvaticus (European woodmouse)
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
asyl03037
]
127693628 (Ift140)
Cilium and associated proteins [BR:
asyl03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
127693628 (Ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_HPS5
TPR_IFT80_172
WDR55
Beta-prop_WDR90_POC16_2nd
TPR_GEMI5
Clathrin
TPR_COPA_B
tRNA_int_end_N2
RNase_HII
Beta-prop_WDR75_1st
Exo84_C
WD40_MABP1-WDR62_1st
TPR_2
Motif
Other DBs
NCBI-GeneID:
127693628
NCBI-ProteinID:
XP_052050583
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All DBs
Position
10:complement(96378848..96455706)
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AA seq
1463 aa
AA seq
DB search
MALYFDHRIKAPDASSSPSHLTWHPTHPFLAVASVSPSSGGNVDIYLEQGEPVPDTHIER
SFQATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVS
GDKLGVLLLWRLDQRGRVQGTPLLKHEYGKPLTHCIFRLPPPGEDLVQLAKAAVSGDEKA
LDMFNWRKSSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQVASTDSSIQTLFYIE
KREALVVVTQNLLLSLYVVTPEGEAEEVMKVKLSGKTGHRADITLIEGSLLVTAIGEPVL
RFWDLERGENYILSLQEKFGFEKGESINCVCFCKAKGLLAAGTHKGRVAMWKKVPSSPNG
RGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSAESVSILSEQAMSSHFHQQVAAV
QISPSLVNVSFLSTGGTHSLRTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTF
LCETSVLAMHEESIYTVEPNRLQVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDL
AHFKSFDLSRREAKVHCSCKNLAQLIPDVGSITSLRCNANGNKISILLSKVDNSPDSKIY
IYDVEMDTVNVFNFKTGQIGQIQTLPFSEPPTNETHFFMNESLASYVPVNHFWDQSEPRL
FVCEALQEAPGAQPQAGDKQPHVEEGTCHKEEVLILSFFASEEHGFLLHDSFPRPSTYQS
LLGMEVPHYYFTKKPGEADKEDRVDSGHYHIPQMVAKRPLRDFVGLEDCDKPTRDAMLNF
SFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREA
EREPEMEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFYQASDQWQKAVEVAELHDRVH
LRTTYYNYAKHLEASADCGLALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWR
WWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQ
YESQDEVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGE
QMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLARCSDFCIEHRQF
EKAVELLLAAKKYHEALQLCLEQNMTITEEMAEKMTVSKDSKDLSEESRRELLEQIANCC
MRQGNYHLATKKYTQAGNKLKAMRALLRSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDW
RKEPEIMKNIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKA
KSPLDQETKLAQLQSKMTLVKRFIQARRTYTEDPKESIRQCEQLLEEPDLDSTIRVGDVY
GFLVEHHVQMEEYQMAYKYLEEMRKRLPSANMSYYVDQRTVDTVHQGLGLPPSRIMPERV
RHNSMEDHKEGYEEVIEEVDNDP
NT seq
4392 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgtattttgaccaccgaatcaaagctccagatgcatccagctctccctcccac
ctcacatggcaccccacccacccgttcctggcagtcgcgtctgtaagcccgtcttccgga
ggcaatgtagacatctaccttgaacagggtgagcccgtgcctgacacccacattgagagg
tccttccaggccacttcactgtgctggcacccaacaaggcttatcctggctatcggctgg
gaaactggagaagtgataatgtttaataagcaggacaaggagcagcacacagtgcccctg
ccacatacaacggacattgccatcctcagttggagtaccagtgggagctgcctggtgtct
ggagataagcttggggtcctgctcttgtggagattggaccagcgaggccgagtacaggga
acaccactcctgaaacacgaatacgggaagccactcacccattgcatcttccgtctcccc
cctcctggggaggatctggtacagttggcaaaggcagcagtgagtggagatgagaaagcc
ctggacatgtttaactggagaaaaagcagctttggaagtttcctgaagacagggtctcaa
gaggggctgtctttctttgtcagtctcatggatgggacagtgcactatgtggatgaaaag
ggcaagactgcccaggtggcatccacagacagctccatccagaccctgttctacatcgag
aagagagaggcactggttgtagtcacacagaaccttctcctgtctctgtatgtggtgact
cctgagggagaagctgaagaagtcatgaaggtaaaattgagtgggaagacaggccaccgg
gcagatatcactttgatagagggcagccttcttgtgacagctattggagaacccgtgctc
aggttctgggacttagaacggggagagaattacatactgagtctacaggagaagtttggc
tttgaaaagggagagagtataaactgtgtctgtttctgtaaagccaaaggtctcctggca
gcgggtacccacaaaggacgagtagctatgtggaaaaaagtgccaagctccccaaatggc
cgtggggcagagggcaaggacatgtgggcccttcagacacctactgagctcgaaggcaac
atcacccagataaagtggggctccaggaagaacctgctagcagtgagcagcgcggagtct
gtgtccatcctcagtgagcaagccatgtcgtcacacttccaccaacaagtggctgccgtg
cagatctccccgagcctagtcaatgtgtctttcctgtccacggggggcacacacagcctg
cgcaccgacatgcacatcagtggagtattcgccaccaaggatgctgtggctgtctggaat
ggaaaacaggtggcgatctttgaaccttcaggatccaccttaaggaatgcagggacattc
ctgtgtgaaacctcagtactagccatgcacgaggaaagcatttacactgtggagccaaac
cgactccaagtccggacctggcagggaactgtcaaacaacttctgctgttctccgagact
gaggggagcccctgcttcctagacgtctgtgggactttcctggttgcagggacagattta
gctcattttaaaagtttcgatctttccagaagggaagcaaaagtgcactgcagctgcaag
aacctggcccagctgatccctgatgtggggagcatcacttctctgagatgcaatgccaat
gggaacaagatcagcatcctccttagcaaggttgacaatagtcctgattccaaaatctac
atctatgatgttgaaatggacacagtgaatgtcttcaacttcaagactggacagatcgga
cagatccaaacgctgccctttagtgagccgccgactaatgagacccacttctttatgaat
gagagcctagcaagttacgttcctgtgaaccacttctgggatcagagtgagcccaggctc
tttgtgtgcgaggccttgcaggaggcacctggagcccagccccaggctggggacaagcag
ccccatgtggaggaaggcacatgccacaaggaagaagtgttgattctctcattctttgct
tctgaagaacatggctttctgctccatgacagcttccctcggccttcaacctaccagagc
cttctgggcatggaagtgcctcactactacttcacaaaaaagcctggggaagcagacaaa
gaagacagggtggattctgggcactaccacatccctcagatggtagccaagaggcccctt
cgagactttgtggggctggaggactgtgacaagcctactcgggatgccatgctcaacttc
agtttctttgtcaccattggagacatggatgaagctttcaaatctatcaaactcatcaag
agtgaagctgtctgggaaaacatggcacgcatgtgtgtgaagactcaaaggctggatgtt
gccaaggtgtgcctagggaacatgggccatgcccgtggggccagagcactgcgggaagca
gagcgggagccggaaatggaggccagagtggctatgctggccatacagctgggcatgctg
gaggaggctgaacaactgtataaaaagtgcaaacgctacgacctcctgaacaagttctac
caggcttcagaccagtggcagaaagccgtggaggtggcggagctccatgaccgtgtgcac
ctacgcaccacctactacaactacgccaagcaccttgaggccagcgcggactgtggcctg
gccctcagctattatgagaagtcagacacccaccgttttgaggtacccaggatgctctca
gaagacctgcagtcgctggagctctacatcaacaggatgaaggacaagaccttgtggaga
tggtgggcccagtaccttgagagccaagcagagatggacaccgcattgcgctactacgag
ctggcacaggactacttctccctggtccgtattcattgcttccagggcaacattcagaag
gctgctgagatagccaatgagactggagactgggctgcatcctaccaccttgcccggcag
tacgagagccaggatgaggtcaaacaagcagtgcacttctacactcgggcacaggctttc
aacaatgccatccgcctgtgcaaggagaatggcttagatgaccagctcatgaacttggcc
ctgttgagctccccagaggacatgattgaggcagcccggtattatgaggagaagggcgag
cagatggacagggctgtcatgctgtaccacaaggctggacacttttccaaagccctggag
ctggccttcaccacccagcagtttgcagcactgcagctcatagcagaggacctggatgag
aagtcagatcctgctctcctggcccgctgctcagacttctgcattgagcacagacagttt
gaaaaggcggtggagcttctactggctgccaagaagtaccatgaggctctgcagctgtgc
ctagagcagaacatgaccatcactgaggagatggcagagaagatgactgtgtccaaggac
tcgaaggacctgtctgaggagtcccggcgtgagctgctagagcagattgcaaactgctgt
atgcgccagggcaactatcacctggccaccaagaagtacacgcaagctgggaacaagcta
aaggccatgagagcactgctcagatctggagacactgagaaaatcgtgttctttgcgggc
gtctcaagacagaaagagatctacatcatggctgccaattacctacagtccctggactgg
cggaaggagccagagatcatgaagaatatcattagcttctacaccaaaggacgagccttg
gacctcctggctggcttctatgatgcttgtgcccaggtggagattgatgaataccagaac
tatgacaaggcccatggagcactgactgaggcctataagtgcctgtctaaagccaaggcc
aagagccccctggaccaagagaccaagctagcccagctacagagcaagatgacactagtg
aagaggttcatccaggcccgaaggacgtacacagaggaccccaaagagtccatcaggcag
tgcgagcagctcctagaagagccagacctggacagcaccatccgtgtcggggacgtctat
ggcttcctggtggaacaccatgtccaaatggaggaataccagatggcctataagtatctt
gaggagatgaggaaaagacttccttcagccaacatgtcatactatgtggaccagcgcact
gtggatactgtgcaccagggcctgggcctccctccatcccgcatcatgcccgagcgggtc
cgccacaatagcatggaggaccataaggaggggtacgaggaggtgatagaagaagtggac
aatgatccctga
DBGET
integrated database retrieval system
