Apodemus sylvaticus (European woodmouse): 127693635
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Entry
127693635 CDS
T10613
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03030
DNA replication
asyl03420
Nucleotide excision repair
asyl03430
Mismatch repair
asyl03440
Homologous recombination
asyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
127693635 (Rpa1)
03420 Nucleotide excision repair
127693635 (Rpa1)
03430 Mismatch repair
127693635 (Rpa1)
03440 Homologous recombination
127693635 (Rpa1)
03460 Fanconi anemia pathway
127693635 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asyl03000
]
127693635 (Rpa1)
03032 DNA replication proteins [BR:
asyl03032
]
127693635 (Rpa1)
03400 DNA repair and recombination proteins [BR:
asyl03400
]
127693635 (Rpa1)
Transcription factors [BR:
asyl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
127693635 (Rpa1)
DNA replication proteins [BR:
asyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
127693635 (Rpa1)
DNA repair and recombination proteins [BR:
asyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
127693635 (Rpa1)
MMR (mismatch excision repair)
127693635 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
127693635 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
127693635
NCBI-ProteinID:
XP_052050600
LinkDB
All DBs
Position
10:48384610..48427985
Genome browser
AA seq
618 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNALVEAGQLASNCVCQVHRFIVNTLKDGRRVVILMDLEVVRSAEEVGLKIGNPVPYNE
GHGQQQQQQQTAPSPASAVTPPASKPQPQNGSLGMGATVAKAYGATKPFGKPSGTGPLQA
SGGAQSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRAT
AFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLP
TVQFDFTGIGDLESKSKDSLVDIIGICKSYEDSTKITVKSNNREVAKRNIYLMDMSGKVV
TTTLWGEDADKFDGSRQPVMAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYKLRGWFD
SEGQALDGVSISDVRSGGTGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENC
MYQACPTQDCNKKVIDQQNGLYRCEKCDQEFPNFKYRMILSANIADFQENQWVTCFQESA
EAILGQNTVYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVIDVKP
VDYRDYSKRLIMNIRKNI
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggtgggacacctgagcgagggggccatcgcggccataatgcagcagggagatacatcc
ataaaacccatccttcaagtcattaacatccgtcccattactacagggaatagtccaccc
cggtatcgactgcttatgagtgacgggttgaacacgctttcctctttcatgctggccacg
cagctgaacgccctggtggaggcggggcagctggccagcaactgtgtgtgccaggttcac
cggttcatcgtcaacaccctgaaagacggaaggagagtagttattttgatggacttggaa
gttgtaagatctgctgaagaagttggattaaagattgggaatccagtgccctacaatgaa
ggacatgggcagcagcagcagcagcagcaaacagccccttccccagcttcggcagtgaca
ccaccggccagcaagccccagccgcagaatgggagcttgggcatgggtgccaccgtagct
aaggcttatggtgccacaaagccatttggaaaaccttctgggactggcccgctgcaggcg
tcaggtggggcgcagtccaaagtggtccccatcgccagcctcaccccttaccagtccaag
tggactatttgtgcccgtgtcaccaacaaaagtcagatccgtacctggagcaattcccgg
ggggaaggaaagcttttttctatagaacttgtggatgaaagtggtgaaatcagagctact
gctttcaatgagcaggtggacaagttctttccccttattgaagtgaacaaggtttattac
ttctcaaagggcactctgaagatcgctaacaaacagttctcagctgttaaaaatgactat
gagatgaccttcaataacgagacttctgtccttccctgtgaagatggccatcacttaccc
acagttcagtttgatttcacggggatcggtgacctagagagcaagtctaaagactcacta
gtagacataattggaatctgcaagagctatgaagattcaactaaaatcacagtgaagtct
aacaacagagaagttgctaagagaaatatctatttgatggacatgtcagggaaagtggtg
accacaactctgtggggagaagacgctgacaagtttgacggctctaggcagcctgtgatg
gccatcaaaggagcccgtgtttctgactttggtgggcggagcctctcagtcctgtcatcc
agcactgtcattatgaatcctgacatcccagaggcctataagctccgtggatggtttgac
tccgaaggacaagctttagatggtgtttccatctctgatgtcaggagtggaggaaccgga
gggagcaacaccaactggaaaactttgtatgaagctaaatcagagaacctgggccagggc
gacaaggcagactacttcagcactgtggcaacagtggtgtttcttcgcaaagagaactgt
atgtaccaggcctgcccaacgcaggactgcaataaaaaggtgattgaccagcagaatgga
ctgtaccgctgtgagaagtgtgaccaggaatttcccaatttcaaataccgcatgatctta
tcggcaaatattgcagattttcaggagaaccagtgggtgacgtgtttccaggagtctgcg
gaggccatccttggacagaacaccgtctaccttggggaactcaaagagaagaacgagcag
gcgtttgaagaggttttccagaatgccaacttccgatcatttacgttcagaatcagggtc
aagctggagacctacaatgatgaatctcgaattaaggccactgtgatagacgtgaagccc
gtggactacagagactatagcaaaaggctgatcatgaacatcaggaagaacatttga
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