Apodemus sylvaticus (European woodmouse): 127693776
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Entry
127693776 CDS
T10613
Symbol
Casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03013
Nucleocytoplasmic transport
asyl03015
mRNA surveillance pathway
asyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
127693776 (Casc3)
09122 Translation
03013 Nucleocytoplasmic transport
127693776 (Casc3)
03015 mRNA surveillance pathway
127693776 (Casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127693776 (Casc3)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
127693776 (Casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
127693776
NCBI-ProteinID:
XP_052050853
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All DBs
Position
10:complement(24238250..24258345)
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AA seq
700 aa
AA seq
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MADRRRQRASQDTEDEESGASGSDSGSPARGGGSCSGSAGGGGSGSLPSQRGGRGGGLHL
RRVESGGAKSAEESECESEDGMEGDAVLSDYESAEDSEGEEEYSEEENSKVELKSEANDA
TDSSAKEKGEEKPESKGTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIP
RKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDRFREDEQAPKSRQELIALYGYD
IRSAHNPDDIKPRRIRKPRFGSSPQRDPNWIGDRSSKSHRHQGPGGNLPPRTFINRNAAG
TGRMSTSRNYSRSGGFKEGRTSLRPVEVGGQHGGRSAETLKHEARYRSRRLEQTPMRDPS
PEPDAPLLGSPEKEEVASETPAVVPDITPPAPDRPIEKKSYSRARRTRTKVGDAVKAAEE
IPPPSEGLTSAATVPETTPPAAKTGNWEAPVDSTTGGLEQEVAQLNIAEQSWSPGQPSFL
QPRELRGMPNHIHMGAGPPPQFNRMEEMGVQSGRAKRYSSQRQRPVPEPPAPPVHISIME
GHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQSPAPLPNPGLYPPPV
SMSPGQPPPQQLLAPTYFSAPGVMNFGNPNYPYAPGALPPPPPPPHLYPNTQAPSQVYGG
VTYYNPAQQQVQPKPSPPRRTPQPVSIKPPPPEVVSRGSS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcttcccaggacactgaggacgaagaatctggtgct
tcgggttccgacagcggctctccggcacggggcggcggcagctgcagcgggagcgccgga
ggcggcggcagtggctcgctgccatctcagcgcggcggccgcggcgggggccttcatctg
cggcgggtggagagcgggggcgccaagagcgcagaggagtctgagtgtgagagtgaagat
ggcatggaaggagatgctgttctttccgattatgaaagtgccgaagattcagaaggtgaa
gaagaatacagtgaagaggagaattccaaggtggagctgaaatcagaagctaatgatgct
actgattcctctgcaaaagagaagggagaagaaaagcctgaatctaaaggcactgtgact
ggagagcggcaaagtggagatgggcaggagagcacagaacccgtggagaacaaagtgggt
aaaaaaggccctaagcatctggatgatgatgaagatcggaaaaacccagcatacattccc
aggaaagggctcttctttgagcatgatcttcgaggacagactcaggaagaggaagtccga
cccaagggacggcagcgaaagctgtggaaagatgagggccgctgggagcacgatcggttc
cgtgaggatgaacaggccccaaaatctcgccaggagctaattgcactttatggctatgac
attcggtctgctcacaatcctgatgacatcaaaccccggagaattcggaaacctcgattt
ggaagttccccacaaagagatccaaactggattggtgatcgatcaagcaaatcccatcgc
caccagggtcctggaggcaaccttccacctaggacatttattaacaggaatgcagcaggt
accggccgcatgtctacatccaggaactactcacgatctgggggcttcaaagaaggccgt
actagtttgaggcctgtggaggttggcgggcagcatggtggccggtctgctgagactctt
aagcatgaagctcgttaccggtcacggcgtctggagcagactcctatgagggatccatct
ccagaaccagatgctccattgcttggaagtcctgagaaagaagaggtagcctcagagaca
ccagctgttgtacctgacatcacaccaccagctcctgacaggcccattgagaagaaatct
tattcccgggcaagaaggaccaggaccaaggttggggatgcagtcaaagctgctgaggag
attcctcctccatctgaagggctcacttcagcagccacagtcccagaaactacgcctccg
gctgctaagactggaaactgggaggctccagtagattctaccacaggtggacttgagcaa
gaggtggcacaactaaatatagcagagcaaagttggagtccaggacagccttcattcctg
cagccacgggaacttcgaggtatgcctaaccacatccatatgggagcaggacctccacct
cagtttaaccggatggaagaaatgggtgtccaaagtggtcgagctaaacgttattcatcc
cagcggcagagacctgtgccagagccccctgctcctcctgtgcatatcagtatcatggag
ggacattactatgatccattgcagttccagggaccaatctatacccatggtgacagccct
gccccactgcccccacagggcatgattgtacagccagaaatgcaccttcctcacccaggt
ttacacccacaccagtcaccagcacctctgcccaatccgggtctctatccaccaccagtg
tccatgtccccaggacagccaccaccccagcagttgcttgctcctacctacttttctgcc
ccgggtgtcatgaattttggtaaccccaattatccttatgctccgggagcactgcctcct
cctcctccacctcctcatctgtatcctaacacacaggctccatcacaggtatatggaggg
gtgacttactataaccctgcccagcagcaggtgcagccaaagccctcgccaccccggagg
actccccagcccgtctccatcaagccccctccacctgaggttgtaagcaggggttccagt
taa
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