Apodemus sylvaticus (European woodmouse): 127695219
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Entry
127695219 CDS
T10613
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04612
Antigen processing and presentation
asyl05145
Toxoplasmosis
asyl05152
Tuberculosis
asyl05164
Influenza A
asyl05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
127695219 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
127695219 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
127695219 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
127695219 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
127695219 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
asyl01001
]
127695219 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
asyl04054
]
127695219 (Ciita)
Enzymes [BR:
asyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
127695219 (Ciita)
Protein kinases [BR:
asyl01001
]
Serine/threonine kinases: Other
TAF1 family
127695219 (Ciita)
Pattern recognition receptors [BR:
asyl04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
127695219 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_14
NLRC4_HD2
LRR_4
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
127695219
NCBI-ProteinID:
XP_052053151
LinkDB
All DBs
Position
10:105185220..105234120
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AA seq
1154 aa
AA seq
DB search
MKHFQAILAQVQALLSSQTPRQVRALLDSLLEEELLSREYHCALLREPDGDALARKISLT
LLEKGDLDSAFLSWVCNGLQAPTAERGTSYRDHQGHSLCATMELGSPEGSYLELLNSDAD
PLRLYHLYEQTDLAGEEEIELSSEPDMDTINYDQFSKLLQDMEMDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEGVGENTEIPVEAGQKPQKRCFPEEHTVDAKHRKLAP
TSRTSLNYLDLPTGHIQIFTTLPQGLWQISGAGTGLPSVLIYHGEIPQVNQVLPSSSPTV
PSLPQSPDRPGSTSPFAPSAADLPGMPEPALTAHVNETEDTTSPSPCQEGPEFSIELPKW
PESVERFQHSLQDKYKTLPESPSGPLVAVELVRARLERGSNKSQERDLATPDWTERQLAH
GGLAEVLQVAGDCRQPRETQVVAVLGKAGQGKSHWARTVSHTWACGQLPQYDFVFYVPCH
CLDRPGDTYYLRDLLCPPSLQPLAVDDEVFDYITRQPDRVLLILDAIEELEAQDGFLHGP
CGPLSPEPCSLRGLLAAIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQA
QTYMRHYFENSGDQHKALGLLEAQPFLLTHSHSPVLCNAMCQLSKALLEQGTEVPLPRTL
TGLYVDLLGPAAQNSPPGALVELAKLAWELGRRHQSTLQETQFPSVEVKTWAVTQGLMQQ
TLGTTEAQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGVPRF
LAGLVFQPRAHCLGALVEPAAAAVADRKQKVLTRYLKRLKLGALRAGRLLELLHCAHETQ
EPGIWEHVAHQLPGHLSFLGTRLTPPDVYVLGRALETAGQDFSLDLRQTGIEPSGLGNLV
GLSCVTRFRASLSDTMALWESLQQQGEAQLLQAAEEKFTIEPFKAKSPKDVEDLDSLVQT
QRLRNPSEDAAKDLPAIRDLKKLEFALGPVLGPQAFPALARILAAFSSLKHLDLDSLSEN
KIGDKGVSELSATFPQLKALETLNLSQNSITDVGACKLAEALPALAKSLVRLSSLYNNCI
CDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTVPFGI
QEHLQQLDARISLR
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaagcacttccaggccatcctggcccaggtacaggcactgctctccagccagacgccc
aggcaggtgcgggctctcctggacagcctgctggaagaagagctgctctcgcgggaatac
cactgtgcccttctccgtgagcccgatggggatgctctggcccggaagatttccctgacc
ctgctggagaaaggggacttagactcggctttcttgagctgggtctgcaacggtcttcag
gctcccacggcagagaggggcaccagctacagggaccaccaaggccatagtctctgtgcc
accatggaactggggtctccagagggcagctacctggagctccttaacagtgatgctgac
cccctacgcctctaccacctctatgagcagacggacctggctggggaggaggagatcgaa
ctcagctcagagccagacatggacaccattaactacgaccagttcagcaagctgttgcag
gacatggaaatggatgaagagacccgggaggcctatgccaacatcgcggaactggatcag
tacgtgttccaggatacccagctagagggcctgagcaaggacctcttcatagagcacatt
ggagcagaggaaggagttggtgagaacacagagatccctgtagaagcaggacagaagcct
cagaagagatgctttccagaagagcatactgtggacgcaaagcacaggaaactagcgccc
acatctaggacatcactgaactatttggatctccccactgggcacatccagatcttcacc
actctgccccagggactctggcaaatctcaggggctggcacggggctccccagtgtccta
atctaccatggtgagataccccaggtcaaccaagtactcccttcaagcagccccactgtc
cccagtctcccccagtccccagaccggcctggctccaccagccccttcgcaccatctgca
gctgacctgcctggcatgcccgaacctgcgctgactgcccatgtaaacgagacagaggac
acaacatccccctccccatgccaagagggtcccgagttttccatcgagcttccaaaatgg
ccagagtctgtggagcgattccagcactctctacaggacaagtacaagacattgcccgag
agcccaagtggtcctctggtggccgtggagctggtgcgggccaggctcgaaagaggcagc
aacaagagtcaggaaagggacctggccactcccgactggacagagcgccagctagcccat
ggtggtctggcagaggtacttcaggttgccggtgactgcaggcaaccacgagagacacag
gtggtcgctgtgctgggcaaggctggccagggcaagagccactgggccaggacagtgagt
cacacctgggcatgtggccagttgccacaatatgactttgtcttctatgtcccctgtcat
tgcttggatcgtccgggggacacctactacctgcgggatctgctctgtcctccgagcctg
cagccactggccgtggatgacgaggtctttgattatatcacgaggcagccggaccgtgtt
ctgctcattctagatgccattgaggagctagaggcccaagacggcttcctgcatgggcct
tgcggacctctgtctccagagccctgctcccttcggggactgctggctgcgatcttccag
cggaagctgctgcgaggctgcaccctgctcctcacagcccggccccgaggccgtctggct
cagagcctgagcaaggcagatgccatctttgaggtgcccagcttctctactaagcaggcc
cagacttacatgaggcactactttgagaactcaggggatcaacacaaggccctgggcctc
ctggaggcccagccttttctcctcacccatagccacagccctgttctgtgcaatgctatg
tgccagctttccaaggccctgctggaacagggcacagaggtcccgctaccccgcacactt
acaggactctatgtcgacctgctaggccctgcagctcagaacagtcctcctggagcctta
gttgagctagccaagctggcctgggaactgggacgaagacaccaaagcaccttgcaagaa
acccagtttccatcagtggaagtgaaaacctgggcagtgacccaaggcttgatgcagcag
actctgggcaccactgaggcccaactggccttctccagttttctgctacaatgttttctg
ggtgctgtgtggctggcacagtgcaatgaaatcaaagacaaggagttgccgcagtacctg
gccttgaccccaaggaagaagagaccctatgacaactggctggaaggggtgccacgcttt
ctggctggactggttttccagcctcgagcccactgcctgggagctctggtggagcctgca
gcggctgcagtggcagataggaaacagaaggttcttaccaggtacctgaagcgcctgaag
ctgggggccctccgggccgggaggctgctggagctgctacactgtgcccacgaaacccag
gaacctggtatttgggagcatgttgcgcaccagcttcctggacacctctccttcctgggc
acccggctcacacccccagatgtgtatgtgctgggcagagccttggagacagctggccag
gacttctccttagaccttcgtcagactggcattgagccctctggactgggaaacctcgtg
ggactcagctgtgtcacccgtttcagggcctccttgagtgacacaatggcattatgggag
tcccttcagcagcagggagaagcccagttactccaggcggcagaggagaagttcaccatt
gagccatttaaggccaaatccccaaaggatgtggaagacctggacagcctcgtgcagacc
cagaggttgagaaatccctcagaggatgcagctaaggatctccctgccatccgggacctt
aagaaactagagtttgcgttgggccctgtcttgggcccgcaggctttccctgcactggcg
aggatccttgcagccttctcttccctgaagcacctggacctggactcacttagtgagaac
aagatcggagacaagggtgtgtcggagctctcagccaccttcccccagctgaaggccctg
gagacgctcaacttgtcccaaaacagcatcactgatgtgggtgcctgcaaacttgcagag
gctctgccagccctagccaagtccctcgtaaggctgagcagcttgtacaataactgcatc
tgtgacaaaggagccaagagcctggcacaagtacttccggacatggtgtccctgcgggtg
atggatgtccagttcaacaagttcacagctgccggtgcccagcagctggcttccagcctt
cagaagtgccctcaggtggaaacactggcaatgtggacacccactgtcccctttgggatt
caggaacatctgcagcaactggatgcccggatcagcctgagatga
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