Apodemus sylvaticus (European woodmouse): 127695256
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Entry
127695256 CDS
T10613
Symbol
Rad50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03440
Homologous recombination
asyl03450
Non-homologous end-joining
asyl04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127695256 (Rad50)
03450 Non-homologous end-joining
127695256 (Rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
127695256 (Rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asyl03032
]
127695256 (Rad50)
03400 DNA repair and recombination proteins [BR:
asyl03400
]
127695256 (Rad50)
DNA replication proteins [BR:
asyl03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
127695256 (Rad50)
DNA repair and recombination proteins [BR:
asyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
127695256 (Rad50)
BRCA1-C complex
127695256 (Rad50)
NHEJ (non-homologous end-joining)
MRX complex
127695256 (Rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
SBP_bac_3
AAA_29
DUF2703
Motif
Other DBs
NCBI-GeneID:
127695256
NCBI-ProteinID:
XP_052053232
LinkDB
All DBs
Position
10:71097045..71290824
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIISFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGEMVAVQRSMLCSQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISCLGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALDTLRQVRQTQGQKVKECQTELKYLKQNKEKACEIRDQITSKEAQLASSQEI
VKSYENELEPLKNRLKEIEYNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGT
DEQLNDLYHNHQRTVREKERRLVDCQRELEKLSKEARLLNQQRAELLVEQGRLQLQADRH
QEHIRARDSLIQSLAAHLELDGFERGPFSERQIKNFHELVKERQEREAKTASQLLSDLTD
KEALKQRQIDEMRDKKSGLGRLIELKTEILTKKQSELRHVRTELQQLEGSSDRILELDQE
LTKAERELSKAEKNSSIETLKAEVISLQNEKADLDRSLRKLDQEMEQLNHHTTTRTQMEM
LTKDKTDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE
LASAEQNKTHINNELKKKEEQLSSYEDKLFDICGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEVISDLQSKLRLAPDKLKSTESELK
KKERRRDEMLGLVPMRQSIIDLKEKEIPELRNRLQSVNRDIQRLKNDIEEQETLLGTIMP
EEESAKVCLTDVTIMERLQMELKDVERKIAQQAAKLQGVDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKFIQEQQEQIQHLKSKTNELKSEKLQIATNLQRRQQMEEQTVELSTEVQS
LNREIKDAKEQISPLETALEKLQQEKEELIHKKHTSNKMAQDKINDIKEKVKNIHGYMKD
IENYIQDGKDDYKKQKETELNDVVVQLNECDKHKEKINKEMGTMRQDIDTQKIQERWLQD
NLTLRKRREELKEVEEERKQHLKEMGQMQVLQMKSEHQKLEENIDAIKRNHSLALGRQKG
YEEEILHFKKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRVKKNIDQCSEIVKCSINSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtgcgaagttttgggatagaggataaa
gataagcaaattatctctttcttcagccccctcacaattttggttggacccaatggggcg
gggaagacgaccatcattgaatgtctaaagtatatttgtactggagatttccctcctgga
accaaaggaaatacatttgttcatgatcctaaggttgctcaggaaacagatgtgcgtgcc
cagattcgcctgcagttccgagatgtcaatggagagatggtagctgtgcagaggtctatg
ctttgtagtcagaaaagtaagaaaacagaatttaaaaccctggaaggagtcatcactaga
accaagcatggtgaaaaagtcagtctcagttccaaatgtgcagaaattgacagagaaatg
ataagttgtcttggggtttccaagtctgtgctaaacaatgttattttctgtcaccaagaa
gactccaactggcctttaagtgaaggaaaggctttgaagcaaaaattcgatgagattttt
tcggcaacaaggtacattaaagccttagatacacttcgacaggtccgtcagacacaaggt
cagaaagtaaaagagtgtcaaacagaattgaaatatctgaagcaaaataaggagaaagca
tgtgagattcgcgatcagatcactagtaaggaggcccagttagcgtcgtcacaggagatt
gtcaagtcctatgagaatgaacttgagccattgaagaatcgcctgaaagagattgaatac
aacctctctaaaataatgagacttgacaatgaaattaaagccttggatagccgaaagaag
caaatggagaaagataacagtgaattagaacagaaaatggaaaaggtttttcaagggact
gatgagcaactaaatgacttgtatcacaatcaccagagaacagtaagggaaaaagaaagg
cgcttggtagactgtcagcgtgaactggagaagctgagtaaagaggcccggctcctcaac
cagcaaagggcagaactgcttgtggagcagggtcgtctgcaactacaggcagatcgccat
caagaacatatccgagccagagattcattgatccagtctttggcagcacatcttgaattg
gatggttttgagcgtggaccattcagtgaaagacagattaaaaattttcatgaacttgtg
aaagagagacaggaaagagaagctaaaactgccagccagctcttgagcgacctcacagac
aaagaagctctgaagcagcggcagatcgatgagatgagggacaagaagagtgggctgggg
aggctgattgagctcaagacagagatcctcaccaagaagcagagcgaactgaggcacgtg
aggaccgagctgcagcagctggagggctcctcggacaggattctggagctggaccaggag
ctcacgaaagctgaacgtgaactaagcaaggctgaaaaaaatagcagcatagaaacccta
aaagcagaggtaataagcctccaaaatgagaaagctgacctggacaggagcttgcggaag
ctggaccaggagatggaacagttaaaccatcatacgacaacgcgcacacagatggagatg
ctcaccaaggacaaaactgataaagatgaacagatcagaaaaataaagtctaggcacagt
gatgaactaacttcactattggggtattttcctaacaaaaaacagcttgaagactggctt
cattctaaatccaaagaaattaatcagaccagggacagacttgccaagttaaacaaagaa
ctagcttcagctgaacaaaataaaactcatataaataatgagctaaagaaaaaggaagaa
cagttgtctagttatgaagataagctatttgatatttgtggtagccaagattttgaaagt
gatttagacagacttaaagaagaaattgaaaaatcctcaaaacagcgagccatgctggct
ggagccacagcggtttattcccagttcatcacacagctgacagatgaaaaccagtcctgt
tgcccagtctgtcagagagtgttccagaccgaggctgagttgcaggaagtcatcagcgac
ttgcagtccaagctgaggcttgctccggataagctcaagtcgacagaatcagaactgaag
aaaaaggaacggcgccgtgatgaaatgctcgggcttgtgcccatgaggcaaagcataatt
gatttgaaggaaaaggaaataccagaattaagaaacagactacagagtgttaatagagac
atacagcgcctgaagaatgacatagaagagcaggaaacactcttgggtacaataatgcct
gaagaagaaagtgctaaagtatgcctgacagatgttacaattatggagaggttgcagatg
gagttgaaagatgttgaaaggaaaattgcacaacaggcagctaagctgcagggagtagac
ttggatcggactgtccagcaggttaaccaggaaaaacaagaaaagcaacacaagctggat
acagtttccagtaagatcgaattgaaccgtaagtttatacaggaacagcaggaacaaatc
caacacctgaagagtaaaaccaatgagctgaaatcagagaaactgcagatagccaccaat
ctgcaacggcgtcagcaaatggaggagcagactgtggaattatccactgaagtccagtct
ttaaacagagaaataaaggatgctaaagaacaaataagccctttggagacagcactggaa
aagttgcagcaagaaaaagaagaattaatccataaaaaacatacaagtaacaaaatggct
caggataaaattaatgatatcaaagagaaagtcaaaaatattcatggttacatgaaagac
atagagaattatattcaagatggaaaagatgactataagaagcaaaaagaaactgaactt
aatgacgttgtcgttcaactaaatgaatgtgacaaacacaaagaaaagataaataaagaa
atgggaaccatgaggcaagatatcgacacacagaagatacaggaaaggtggctacaggat
aaccttactctaagaaaaaggagagaggaactaaaagaagtggaagaagagcgaaagcag
catttgaaggagatgggacaaatgcaagttttacaaatgaaaagtgagcatcagaagttg
gaagagaacatagatgctataaagagaaatcacagtttggcattggggcgacagaaaggc
tatgaagaagaaattcttcactttaagaaggagctccgagaacctcagtttcgggatgct
gaggaaaagtacagagaaatgatgatcgtcatgaggaccacagagctggtgaataaggac
ctggacatctactacaagactcttgaccaagcaataatgaaatttcacagtatgaaaatg
gaggaaatcaacaaaattattcgcgatctttggcggagtacctatcgagggcaagatatt
gaatacatagaaattcgatccgatgctgatgaaaatgtgtcggcttctgataaacggcgg
aattacaactaccgggtggtgatgctgaagggggacacggccttggacatgcgtggtcgg
tgcagcgctgggcagaaggtgctagcctcactcatcatccgcctggcattggctgaaacc
ttctgtctgaactgtggcatccttgccttggatgagcctactacaaatcttgaccgagaa
aacattgaatctcttgcacatgctttggttgagatcataaaaagtcgctcacagcagcgc
aacttccagcttctggtaatcactcacgatgaagattttgtggagctcttagggcgctct
gagtacgtggagaaattctacagggtgaagaagaacatcgaccagtgctcagagattgtc
aagtgcagcattaactccctgggctcttatgttcactga
DBGET
integrated database retrieval system
