Apodemus sylvaticus (European woodmouse): 127695608
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Entry
127695608 CDS
T10613
Symbol
Slx4
Name
(RefSeq) structure-specific endonuclease subunit SLX4 isoform X1
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
127695608 (Slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asyl04121
]
127695608 (Slx4)
03400 DNA repair and recombination proteins [BR:
asyl03400
]
127695608 (Slx4)
Ubiquitin system [BR:
asyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
127695608 (Slx4)
DNA repair and recombination proteins [BR:
asyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
127695608 (Slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
127695608
NCBI-ProteinID:
XP_052053883
LinkDB
All DBs
Position
10:complement(98763863..98786720)
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AA seq
1725 aa
AA seq
DB search
MEESDDDFKELCASFFQRVKKNATKEASGERMRRKASGHAQNRGKRKEASQVARSKALQG
PSEKKPRLGRTKKQGAPRSQEGDPALPVNGKGDVLAPIPDQPVLCERAQSIHTESAPNGD
SQPLPSCFTTTGVPSPFKPRASELVLQRMKQFKRADPERLRHASEESSLKTALGENVPRS
PQEEIVVENEYKLHAADSDAAVALALQQEFRREEASSHHDSLEEKGLFFCQMCQKNLSAM
NVTRREQHVNRCLDEAEKAQKPAPPQVPDCPICGKPFLSSKSRISHLKQCAVRMEVGPQS
LLQAVRLQTAQPEAGGSPQVPSFSNRVGGLKRKGAAKREPQRRRKASEPEAPSEDLLVAM
ALSRSEMEHCPVVPPLRLENAFSEKIRLGAEKKSRKKRPPVCPPQLVTQDSETTSRQIED
RVAQLLSEEIELSCTPPLLASRIFKEELEHAGWRAQLPEGKRNFLWELSALTGAWAKESF
YAEGLFPPVVSQGPTKEPEPPLELPRQREPPASQSSLPVSHSPKNQLLSSSQRERQALQD
LVDLAAEGLSSSPRLSSLGVPTGLDLVPSSLPLTGFVPPCEKTLKEDDGASLSLGLLVTD
FGAMVNNPHLSDVQLQLDSGEVLYAHKFVLYARCPLLIQCVNTEGFCAVEDGDLTQRVLL
SDVSSEAALAFLNYLYMANADMPPSLVPALRSLALRFAVSDLVRLCEQVPAVVDLEGEQP
EDSEDCKSRAETFQELLRTVWEDEEEEAETLLKPEVCEEDREKMNEAEMEEIYDFAATQR
KLLQAERAAHTVGSTNQRGEDSPGSEPSLAGLHRSRQLETTEQMEWSELEKEEALASWEQ
EGKSARLQDQCPDWAGEAEAQDALGEALDHPSFRSPSDSCQGRGKECLPLRSNKAPDYKQ
LLPSNPRASSELSQITVDHEEQNDCVGERQADMAQAPSPHPCGLLSQSSEGGSPSQSWLH
LYHTSRLSPSVSQSHDGISKVAPPSSLSPVTPAKQRDSNRLALRKEAGHHRDTQSSPVVG
RRHRGVLISPAKSPPIDLTQSVPEPLSPRAQDPLHPLKTEGEVILLLDSDEEQELAHTKT
ESVSKDSPEGRNLPEVSPRSAELFSVIDVEEDHEHFQSPLKRETGLQRGEEGQLGNQSVL
GRRDIPWLFCSQKNSLDEDSTTDTSWLVPATPGVSKSRDCSSQTQIKSLKTRTPSDETAQ
QTARPDLERRSVLEPAQQFSVIMPHTQPITLGASDSGRQAYRSPSLPYARPHRLSSSQPL
CPGPDFTRWSQISSSPRPCLPNPPAADEVVEVGDSDDEQEVASHQGNSSPVLDGDPPGPM
GDYCWHEPLSPIPIDHLNLERTGPLTTSSPSSQVQEAPHSDDCHSPGLGTTPIRGSYGAL
RESQEQSSQAGSPERSKLSVLSQALWDDWDEEEGHSPESPPVAQMLSGRTRKPDRPETPK
GADQKRNLPPKVPITPMPRYSIMETPVLKKELDRFGVRALPKRQMVLKLKEIFQYTHQTL
QSDSEDEVQSSQIPPEVPCSQAETCSPARSGSYTQLKAPAGRGTQRSKGPNKGKSLQHRE
KQPRESISHPSTAPAGGPACPAGDIQLPASQGPMAASVDGTDNSFSSQSSSGEFGAAFES
AGEDETEDDGLTASQVAMQAADIEAAVRRYICSKPALHRKVLMYQPLELAELQAELKQNG
IPVAMGKLLDILDAQCVTFTTAAARKEKLKQKRRQTSGRKKRDQK
NT seq
5178 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtcagatgatgatttcaaagaactctgtgccagctttttccaaagggtgaaa
aaaaatgctaccaaagaagcatcaggagagaggatgaggcggaaggcctccgggcacgct
cagaacagaggcaaacggaaagaagccagccaagtcgccaggagcaaagcccttcaaggc
ccgtcagagaagaagcctcgattaggcaggactaaaaagcaaggggcacccagatctcaa
gaaggggacccagctctccctgtgaatggaaagggagatgttctcgctcctatcccagat
cagcctgtgttgtgtgaaagagcacagagcattcacacagagagtgctcccaatggcgac
tcccagccccttccgtcctgtttcacgacgactggtgtgccaagtcccttcaagcccaga
gcctcagagcttgttctgcaacggatgaagcagttcaagagggcagaccctgagcgcttg
agacatgcctcagaagaatcatccctgaagaccgcactgggagaaaatgtcccaaggagc
cctcaggaggagatagtggtagaaaacgagtataagcttcatgccgcagacagcgatgct
gcagtggccctggccttacagcaggagtttagaagggaggaagcatcctcacaccatgac
agcctggaagagaaggggttattcttctgtcagatgtgccagaaaaacctctcagcaatg
aacgtgacccggagggagcaacatgtgaacagatgtctagatgaggcagagaaggcacag
aaacctgctcctcctcaggtccctgactgcccgatatgtggtaaaccgttcctcagcagc
aagagccgcatcagtcacttgaagcagtgtgcagtgaggatggaagtcgggccacagtcc
ctgcttcaggctgtgaggctgcagacagctcagccagaggctggcggcagccctcaggta
cccagtttcagcaaccgtgttggaggtttgaaacggaaaggagccgccaagagggagcca
cagaggagacggaaagccagtgagcctgaggctccgtctgaggatctgctggtggccatg
gctctgtctcgctctgagatggagcactgtccagttgtacccccactcagactggaaaat
gctttttccgagaagataaggctaggagcagagaagaaaagtcgcaagaagagacccccg
gtgtgtcccccacagttggtaacccaagactctgagaccacaagtagacagatcgaggat
cgtgttgcccagctcctgtcagaggaaatagaactgtcttgcaccccgccacttcttgcc
agcaggatttttaaggaggaattggaacatgcaggctggcgcgcgcagctgcctgaaggg
aagcggaattttctgtgggagctcagcgccctcacaggagcctgggctaaggagtccttc
tacgcagagggcctgtttcctccagttgtgtcccagggccctaccaaggaacccgagcca
ccactggagctgcccaggcagcgagagccacctgcttcccagagcagccttcctgtgagc
cacagccccaagaaccagctgctgtcgtccagccagagggagcgtcaagcccttcaggac
cttgtggacttggcagccgaggggctgagctctagcccacggctcagcagtctgggcgta
cccacaggcttggacttggtacctagcagccttccgctgacagggtttgttccgccatgt
gagaagacccttaaggaggatgacggtgcctcactctctcttgggttattggtgacagac
tttggggccatggtcaataatccacacctgagtgatgtccagttgcagcttgacagcgga
gaggtgctctatgcccacaagtttgttctttatgctcgctgcccccttcttattcagtgt
gtaaatactgaaggcttctgtgctgttgaggatggggatctgacccaacgcgtcctgctg
agtgacgtgagctctgaggctgccctcgcatttctgaactacctctacatggcgaacgct
gacatgcctcccagcctggttcctgctctgcgttccctggccctgaggtttgctgtgagc
gaccttgttcggctgtgcgaacaggtgcctgctgtggtggacttagagggagagcagcca
gaggacagtgaggattgcaaaagcagagctgagactttccaggaactcctgaggacagtg
tgggaagatgaagaggaggaagcggagactctgctgaaacccgaggtctgtgaagaagac
agagaaaagatgaatgaagcagaaatggaagagatctatgactttgcagctacacagagg
aagctcctccaggcagaaagagcagcacacacagttgggagcactaaccagcgtggggag
gacagtccaggttctgagccttccctggcagggctccacaggagcagacagctagaaact
acagagcaaatggagtggtctgagttagaaaaagaagaggcactagctagctgggaacag
gaaggaaagtccgctcgtctacaggaccagtgcccagactgggcaggggaagcagaggcc
caggatgcactgggggaggcacttgaccaccccagctttcgcagcccttctgacagctgc
caagggagggggaaagaatgcttgcctttgcgctcaaacaaggcccctgactacaaacag
ctcctcccatcaaatccaagagcgtcatctgaactgtcacaaataacagttgatcatgaa
gagcagaatgactgtgtcggagagaggcaggcagacatggcccaggcaccttctccacac
ccctgcggccttctgtcacagtcttctgagggtggaagtcccagccagtcatggcttcac
ctataccacacaagcagattgtctccctcagtgtcccagtcacacgatggcatttccaag
gtggcgcccccaagctcactgtctccagttacaccagctaagcagagggacagtaaccgt
ctcgccttacggaaagaagccggccaccacagagacacacagagtagccctgtagtgggg
cgcagacataggggtgtcctgatctccccagcaaagtctccacccattgacctgacacag
tcggttcctgagccgctgagccccagggcccaggatcctctgcatcccctgaagacagag
ggtgaagtcatcctgttactggattcagatgaggagcaggagctggcgcacaccaagaca
gagtcagtttctaaagattccccagaaggaaggaaccttccagaagttagccccaggtcc
gctgaactgttttcagttattgatgttgaagaagatcacgaacatttccaaagcccactg
aagagagagactgggctacagcggggagaggagggacagctgggaaaccagtctgtgctg
ggccgcagagacattccctggctgttctgcagccagaaaaacagcctggatgaggacagc
acaacagatacttcttggctggtgcctgccactccaggggttagcaagagtcgcgattgt
tcatcacagacccagatcaaaagccttaagaccaggactccgtccgacgagactgctcag
cagacagccaggcctgacttagaacgcaggtctgtgctggaaccagcccagcagttctcc
gtgatcatgccacacacacagcctattactctaggagcctctgacagtggaagacaggcc
tacagaagcccttcccttccctacgccaggccccacagactctcttcttcacagccatta
tgtcctggccctgattttaccaggtggtcccagatatcctcctcacctagaccatgcctg
ccaaatccacctgcagccgatgaagtggtagaagttggggacagtgatgatgagcaggag
gtggcttcccatcaaggaaacagcagccctgtgctagatggtgaccccccaggtcccatg
ggtgactactgttggcatgagcctctctcaccaattccaattgaccacttgaatctggag
cggactggccccctgacaacaagcagtcccagcagtcaggtccaggaggctccgcacagt
gatgactgccactccccaggacttggcaccacccccatccgaggaagctatggtgctctg
agagagtctcaagagcagtcctcacaggctggctctccagagagaagcaaactgagtgtc
cttagccaagctctctgggacgactgggacgaggaggaaggacactctccagagtctcca
cctgtggcccaaatgctgagtggcaggactcggaagccagacaggccagagacaccaaaa
ggtgctgaccagaaaaggaacttgccccccaaagtgcctataactccaatgccaaggtac
tcgatcatggagaccccggtgctgaagaaagaactggacaggtttggagtccgtgctctg
cccaaacgccagatggttctaaaactgaaggagattttccagtacactcaccagactctg
cagtcagactctgaggatgaggtccagtcctcccagatacccccagaggttccttgcagc
caggctgagacctgcagtcctgcaaggtcaggaagttacacccagctcaaggcccctgcg
ggtcgtgggactcaaagatccaagggccctaataaaggcaagagccttcaacaccgggag
aagcagcccagggaaagtatctcccacccaagcaccgcgccagctgggggcccagcatgc
cctgctggcgacatccagctcccagcctcccagggacccatggctgcctctgtggatggc
actgacaactcctttagctctcagagctcctctggtgagtttggagctgcctttgagtct
gcaggtgaagacgagactgaggacgatgggctcacggcatcacaggtggcaatgcaggct
gcagacatagaggcggccgtgaggcgctacatctgctccaagcccgccttgcacaggaag
gtcctgatgtaccagcctctggaactggctgagttgcaggcggagctgaagcagaatggc
atccctgtggccatgggcaagctgctggacatcctggacgctcagtgtgtcaccttcacg
actgccgcggcccggaaggagaagctcaaacagaagagacggcagacctcaggccgaaag
aaaagggatcagaaatga
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integrated database retrieval system
