Apodemus sylvaticus (European woodmouse): 127697007
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Entry
127697007 CDS
T10613
Symbol
Palb2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03440
Homologous recombination
asyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
127697007 (Palb2)
03460 Fanconi anemia pathway
127697007 (Palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asyl03400
]
127697007 (Palb2)
DNA repair and recombination proteins [BR:
asyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
127697007 (Palb2)
FA (Fanconi anemia) pathway
Downstream FA components
127697007 (Palb2)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
127697007
NCBI-ProteinID:
XP_052055807
LinkDB
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Position
1:83713233..83738064
Genome browser
AA seq
1091 aa
AA seq
DB search
MEELSGKPLSCAEKEKLKEKLAFLKKEYSKTLARLQRAKRAEKVKKAIEDRVLPQDLSPQ
LSRSEPINKGFPCDLLQSNHLDEETGENISQILDIEPPGAGDIQGQFLHSTTSPDGKRGQ
NTLPGTTKKLGEKSSVSQEKEDVFDTNSLVLPGKHRKRQETIGSKNPRAPISEKTHLLRL
KSQTPDPSALVTGIDGDDALFPPSGKSERGIDRPVRGNNVSVETVVPSCTVSDTNHSQHL
EHTPPNSGCKITTQDLASSINLVAQDKKMTVFTDNSVVYKTVDAGGQLPGSPNLGSVNDL
THSHLAANTTQNSKSLKSPGNIVDGRKENLQEDEILGSSKNLSPAAVSPPSTESQIHSCT
MLEGLLFPAEYYVRTTRRMSDCQRKIALEAVIQSHLGVKKLKKKNKATKDIVLSSEETDH
SDSSMLDTSTGQSSSGNLSQKILSPAKVGSPPGPADNPSREAITQPSGRGHRGKRKSGKR
TSTLGHCRLLFPPCATLAVNRSKGKFTKHKCQNREVIIHDFELPDEDFGLLKLEKLKSYS
EKLIESPDSKNCGERLPREGDHAALEGLQVDSEAVGLDQELTVPPGEACQPRPALRRQPG
GKGLSSSIVLFTPTDTAAPVDSGRPAPSLCSPTFPILGMTPALGSQAAGENMSTEATQPC
STSQPSLLGDTNSLVNNSKQCNTSACSPKPDTKLQVSGRRRQPACDSDSGPQATPLPVES
FPFRENQLCGDACLELHERPTEQTETADLPACDSLNPGNLQLVSELKNPSSSCSVDVSAM
WWERAGTKEPCIITACEDVVSLWKPLNSLQWEKVHTWHFTEVPVLQIVPVPDVYNLICVA
LGSLEIREIRALLCSSGDESEKQVLLKSGDIKAVLGLTKRRLVSSTGNFCNQQIQIMSFA
EDGSSKDEQLLMPPDETVLTFAEVQGTQEALLGTTTVNSIVIWNLKTGQLLKKVHIDDSY
QASVCHRAYSEMGLLFVVLSYPCAKESQAFGSPVFQLLVINPKTARSVGVLLCSLPQGEA
GRFLEGDVKDHIAAAVLTSGTIAIWDLLLGHCTALLPPVSDQSWSLVKWSGTDSHLLAGQ
KDGNIFIYRCF
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggaagagctttccgggaagcccctcagctgtgcggagaaggaaaagttgaaggaaaaa
ctagcatttttgaaaaaggaatacagcaagacacttgctcgccttcagcgtgccaaaaga
gctgagaaggttaagaaagcaatagaagatcgtgtgcttccgcaggacctctccccacag
ctaagccgctctgaacctataaataaaggctttccttgtgacttgttacaaagcaaccat
ctcgatgaggagaccggagaaaacatctctcagatacttgatattgaaccaccaggagca
ggtgacatccaaggacaatttttgcatagcaccaccagccctgatggtaagagagggcag
aatacacttccaggaacaacaaagaagctgggggaaaaatcatctgtttcacaggagaag
gaagatgtctttgacactaattctcttgtgctccctggcaagcaccgaaaaagacaggaa
acaattggtagcaagaatcctagggccccaataagtgaaaagactcaccttttaaggctg
aaatctcaaactcctgacccttcagcccttgttacaggaatcgatggagacgatgcatta
tttccaccatctggcaaatcagaaaggggtattgatagacctgtgagaggaaataatgtc
tctgtggagactgtagttccttcatgtactgtgtcagacaccaatcatagtcagcatctt
gaacatacaccgcctaacagtggctgcaaaattactactcaggacctggcttcatccata
aaccttgtggcacaagacaaaaaaatgactgtatttacagataactcagtagtatataaa
actgtggatgctggtggtcagctgccaggaagtcctaatttgggttctgtaaatgatctc
actcatagtcacttggcagcaaatactacccaaaactctaaatctttaaaatctcctggt
aacattgttgatgggagaaaggagaatcttcaggaagatgaaattcttggttcatctaag
aacctcagcccggcagcagtctcccctccttccacagaaagtcaaatacattcttgtaca
atgcttgaaggccttctgtttcctgcagaatactatgttagaacaacccgtcgtatgtca
gattgtcagaggaaaatagctctggaagctgtgattcaaagtcatttgggtgtcaagaag
cttaaaaagaaaaacaaagcaactaaggacatagtcctctccagtgaggaaactgaccac
agtgacagtagcatgttggatacgagcacaggacagtcaagctcaggaaacctctctcag
aaaattctctcaccagccaaggttggctctcctccaggacctgctgacaacccatctagg
gaggccattacacagccatctggtagaggacacagagggaaacggaaatcagggaaacgc
acctccacactgggtcactgtcgactgcttttccctccttgtgctacactggctgttaac
aggtccaagggcaaattcaccaagcataagtgtcagaacagagaagtgattattcatgac
tttgaattacctgatgaagactttgggcttcttaaacttgaaaaattgaagtcctactca
gagaaactgattgagtctcctgactcaaaaaactgtggtgagagacttcctagagaagga
gaccatgctgctctggaaggactgcaagtagattcggaggcggtgggcctggaccaggag
ctcactgttcccccaggagaagcatgccagccacggccagccctgagaaggcagccaggg
ggcaagggcctttcttcatctatagtgctcttcactcctacagacactgctgcgcctgtt
gacagtggccggcctgctccctccctgtgttcgcccactttccccatcttaggcatgact
ccagctcttggctcccaagcagctggtgagaatatgtctactgaagctacacagccttgc
tctacatctcagccttctctcttgggagatacaaacagtcttgttaataacagtaaacag
tgcaacacttcagcctgctcaccaaaaccagataccaagctgcaggtgtcaggtaggcga
agacaacctgcatgtgacagtgactctggtccccaagcaacacctctacctgttgagtca
ttccctttcagagaaaatcagctttgtggagatgcatgcctcgagttacatgaacgtccc
actgagcagactgaaactgcagatctccctgcttgtgacagcttaaacccaggcaatcta
cagttggtttcagagttaaagaatccgtccagttcctgctctgtggatgtgagcgccatg
tggtgggaaagagctgggactaaggagccatgtatcataactgcttgtgaagatgtagtt
tctctttggaaacccttgaattctttgcagtgggagaaagttcatacctggcacttcaca
gaggttccagtattacaaatagttccagtgcctgatgtttacaatcttatatgtgtagct
ttgggaagtttggaaatcagagaaatcagggcattgctgtgttcctcgggtgatgaaagt
gaaaagcaagtcctcctgaaatctggagatataaaagctgtgcttggcctgacaaagagg
agactagttagtagcactgggaacttttgcaatcaacaaatacaaatcatgtcatttgct
gaagatggaagcagcaaagatgaacagcttttgatgcctcctgatgagactgtactgact
tttgctgaagtccaagggacgcaggaagctctgcttggcactaccactgtgaacagcatt
gtgatctggaatttaaaaactggccaactcctgaaaaaggtgcacattgatgactcttac
caagcgtccgtctgtcacagagcctattctgagatggggctcctgtttgttgttctgagt
tatccttgtgccaaagagagccaggcctttggaagccccgtgtttcagttgctggtgatt
aaccctaagacagctcggagtgtgggtgttctgctgtgctcccttccccagggggaggct
gggaggttcctggaaggggatgtgaaagatcacatcgcagcagcagtcctgacttctggg
actattgccatttgggatttgcttctgggtcactgcacggctctcctcccacctgtctct
gaccagagttggtctttggttaaatggtccggcacagattctcacttgctagctggacaa
aaggatggaaatatatttatataccgctgcttttaa
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