Acetobacter senegalensis: ASN_393
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Entry
ASN_393 CDS
T04217
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asz
Acetobacter senegalensis
Pathway
asz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASN_393 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asz03019
]
ASN_393 (vacB)
03016 Transfer RNA biogenesis [BR:
asz03016
]
ASN_393 (vacB)
Enzymes [BR:
asz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ASN_393 (vacB)
Messenger RNA biogenesis [BR:
asz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ASN_393 (vacB)
Transfer RNA biogenesis [BR:
asz03016
]
Prokaryotic type
tRNA degradation factors
ASN_393 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CEF39819
UniProt:
A0A0U5EQS1
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All DBs
Position
I:347368..349686
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AA seq
772 aa
AA seq
DB search
MPKGIGASALPGHEVIRQFLEADSAPVGPTDILRALGLPARLKAALRATLHDMALAGDLA
CLPPGRLKGVTGLPETVRAKITRLRSDGQAYAHLPDEPAISLLLVSTLPDGTLLLPGDEV
VARLRPRLSLRGRREGRPLRLLSAAPRLFPATVQPDVSPASAPPTSSLPSTSPTDATAND
VSENRTILPEGNAKEDQSAASVQPAEAGAAEHPIALVPCDRRFGQVLYAASGSLSPETVV
LAELVPHQPGKPPKASIRTVLGPVDAPGMAARLALLTHPMPTVFSPEAEAEARHLATLPI
DAEALPLDTDTDTDTDTDTDITFSGRALPRKLSGHPVVRRDLRTIPLVTIDEATAEDFDD
AIWAERTTDGFHLLIAIADVAHYVRPGSALDQDARNRGNSVYLPGQVVPMLPLALSADVC
SLKPREDRLCVYIDLHITADGQRVSGRFGRGLMRSAARLTYQAVQEALESSPQSQSEAPE
PPASKPNTPWAALPPDLLPTLMAAAHALQQAQPPHPADRTGEEEFVVTLDASGHPTAFTP
RQRLPAHDLVASFMIAANCFAAEELDRHAAPGLFRVHPAAPSSTQQRRQMARYAPRPAWH
DGLQLACYTHFTSPIRRYADLVNHRALLATLMPSDRAMEGRGESATLSPSAMHALAGHLH
LAERRASSATQACYNRLAALFLRPFIGQTLRACVTGTTRTGVAVTLTKTGTPSFLFSSAL
PDELRMNDDSPAPRTNLNPEATLQVGTVLSVVLISTNPAQGTLDLALARNAR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagggcatcggggcctcggccctgcccgggcatgaggtcattcgccagtttctg
gaggcagacagcgctcccgtagggcctacggacattctgcgggcgctcggtctgcctgcg
cgcctgaaggcggccctccgtgcaacgctgcatgatatggcgctggcgggtgatctggcc
tgcctgccaccgggtcgcctgaaaggcgtcacaggtctacccgaaaccgtcagggcaaaa
ataacccgcctgagatcagacggacaggcttacgctcacctgccggatgagcccgctatc
tcccttctgctggtctcaacattaccagatggcaccttgcttttgccgggtgacgaagtg
gtcgcccgcctgcggccccgtctgtccctccgtgggagacgggaaggtcggcctctgcgg
ctgctttccgctgccccgcgcctctttcctgccaccgtacagccagatgtttctcctgca
agcgccccccctacgtcgtctcttccaagcacgtcgccgactgacgcgactgcgaacgat
gtatctgaaaaccgcacgattcttcctgagggcaacgctaaagaagatcagtctgctgcc
agcgtgcagcccgccgaagcgggtgctgcggagcaccctatcgccctcgttccctgcgac
cgccgattcggtcaggttctttacgcagcttcagggtctctctcaccagagactgtggtt
ctggccgaactcgttccccaccaacccggaaaaccacctaaagcctccatccgcaccgtt
cttgggccagtcgatgcgccggggatggcggcccgcctcgcacttctcacgcaccccatg
cctaccgtgttctcacccgaagcagaggcagaagcccgtcatctggcaaccctcccgatt
gacgcagaagccctccccctcgacaccgacaccgacaccgacaccgacaccgacaccgac
ataacgttctctgggcgcgcgctcccacgcaagctttctggtcaccctgttgtgcgccgt
gaccttcgcaccatccctcttgtcacgattgatgaggccaccgccgaagattttgacgat
gcgatctgggcagaacgcaccactgacggcttccatctcctcatcgccattgccgatgtc
gcccattatgtccgccccggctccgcgctggatcaggacgccagaaaccggggcaattcc
gtttatctaccagggcaggttgtgcccatgttgccgttggctctttccgccgatgtgtgt
tcgctcaaaccgcgagaagacaggctgtgtgtctatatcgacctgcacatcactgccgat
gggcaacgggtatcaggtcgttttgggcgcgggctgatgcggagtgctgcccgcctgacc
tatcaggctgtgcaggaggcactcgagtcttctccacagagtcaaagcgaggcccctgag
cccccggcttccaagccaaatacgccttgggccgcactgccaccggatctgctgcccacc
ctgatggcggccgcccatgccctgcaacaggcgcagccccctcacccggcagatagaacg
ggggaagaggagtttgtggtcacgctggatgcctctgggcacccgaccgccttcacccca
cgccaacgactgcccgcgcatgatctcgttgccagcttcatgattgccgccaactgcttt
gccgcagaagaactggatcgccacgcggctccgggcctgttccgtgtccatccggcagcg
ccttcctccacgcagcaaagacgccagatggctcgttatgcgccccgcccggcctggcat
gatggattgcagcttgcctgttatacgcatttcaccagccccatccgccggtatgcggat
ctggtgaaccaccgtgccctgctggcgacactgatgccctctgaccgcgcgatggagggc
cgtggcgaatcagccacgctctcacccagcgccatgcatgctctggccgggcacctgcat
cttgccgagcgccgtgcttcttctgccacacaagcatgctataataggctggcagcgctc
ttcctgcggcctttcattggccaaaccctgcgggcctgtgtgaccggaacaacacggacc
ggcgttgccgtgacattgacgaaaaccggaactccgtctttccttttttcaagcgccttg
ccggatgaattacggatgaatgacgactcgcctgccccccgcacaaacctgaacccggaa
gccacgcttcaggtgggtactgtgctgtctgttgtcctgatctcaaccaatccggcgcaa
ggcacgcttgatctggctcttgcccgcaatgcgcgctga
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