Agrobacterium tumefaciens S33: AWN88_04520
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Entry
AWN88_04520 CDS
T04213
Name
(GenBank) Ku protein
KO
K10979
DNA end-binding protein Ku
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AWN88_04520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_04520
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AWN88_04520
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Gene cluster
GFIT
Motif
Pfam:
Ku
Coilin_N
Motif
Other DBs
NCBI-ProteinID:
AMD58784
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All DBs
Position
circular:complement(1012160..1013059)
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AA seq
299 aa
AA seq
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MVAPRANWKGFIKFGEVACPVALYTAASSSERIAFNTLNRRTGNRVKREFIDSATGDRVE
RDAQVKGYEIENGQYIVLEPDEVAAAVPHSDKTLKIDAFIPCSEIDSVYFDKPYYLAPDR
MGTDAFVLLRDGMKRAKVAAIARTVLFRRLRTVLIRPHGKGLIATTLNFDYEVRSSAEAF
EELPDLKIEGEMLELAEHIIGTKKGTFDASTFDDRYEAAVAELVKAKIEGRALPKKKAAA
VPRQNDLLQALRESAGMGTKSRQKRAASNANKSAGRQKASKPGAAAKSNAVSSQTRRAG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggttgccccgcgagcgaactggaagggctttatcaaattcggagaggtcgcgtgtcct
gtggctctctacactgcggcatcatcatcggagcggatcgctttcaacaccctcaatcgc
cgaaccggcaaccgggtgaaacgcgaattcatcgacagcgcgaccggcgatcgggtggaa
cgggacgcccaggtcaagggctatgagatcgagaacggccagtatatcgttctcgagccg
gatgaggtggctgccgccgtgccccacagcgacaagacgctgaagatcgacgccttcatc
ccctgcagcgagatcgacagcgtctatttcgacaagccgtattatctggcgcccgacagg
atggggacggacgctttcgttcttttgcgcgatggcatgaaaagagccaaagttgctgcg
atcgcccgcaccgtgctcttccgacgcctgcgtacggtgctgatcaggccacacgggaag
ggcctgatcgccacgacgctcaactttgactatgaagtccgctcgtcggcggaggccttc
gaggagttgccggaccttaagatcgaaggcgagatgcttgagcttgccgagcacattatc
ggcacaaagaaggggaccttcgatgccagcacgttcgatgaccgttatgaagccgccgtt
gccgagctggtgaaggccaagatcgagggcagggccctgccgaagaagaaggccgcagcg
gtccccaggcaaaacgaccttttgcaggcgctgcgtgagagtgctggcatgggcaccaaa
tccaggcagaaacgcgccgcttctaacgccaacaagagtgctggccgtcaaaaggcttca
aaaccgggtgctgctgccaaatcaaatgcggtctcgtcacagacccgccgcgctggctga
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