Agrobacterium tumefaciens S33: AWN88_05015
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Entry
AWN88_05015 CDS
T04213
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWN88_05015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ata03019
]
AWN88_05015
03009 Ribosome biogenesis [BR:
ata03009
]
AWN88_05015
Enzymes [BR:
ata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWN88_05015
Messenger RNA biogenesis [BR:
ata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWN88_05015
Ribosome biogenesis [BR:
ata03009
]
Prokaryotic type
rRNA helicases
AWN88_05015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
SBF_like
Motif
Other DBs
NCBI-ProteinID:
AMD57592
LinkDB
All DBs
Position
circular:1116702..1118549
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AA seq
615 aa
AA seq
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MTDTQGIAPAIAQALEKRGYKDLTPVQQAMLAPELADKDALVSAQTGSGKTVAFGIALAT
TLLRDNTRFGQAAAPLALAIAPTRELAMQVKRELEWLYEFAGVSIASCVGGMDIRNERRA
LERGAHIVVGTPGRLCDHIKRNALDLSSIRAVVLDEADEMLDLGFREDLEFILEESPEDR
RTLMFSATVPRSIAKLAESYQKNAVRIATASEQKQHVDIEYRALLVSPSDRENAIINALR
FYEARNAIVFCSTRAAVNHLTARLNNRGFSVVALSGELTQNERTHALQAMRDGRARVCVA
TDVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGQKGVSAIVVPVSQRRKAERLL
EGAKVSAAWVHPPSVEEIVERDGARLLADPTLSEAVADDERDFVTKLLEQHGAEKVAAAF
VRLYHAGRSAPEDIFEVALDNTRKPRRDSFETPENNAPRRDRSDFSDSAWFSLSVGRKQS
AEPRWLIPMLCRFGKITRQDIGAIRMQQTETFVELAADAVDRFTSAIGKDMTLEKGIRLK
ALEGKPEMTGGFREDTRPAKAQRKFSKSDNASAPRDDRKGEDKPWKKKKPFGDKPKYEGK
KDKPFEKRGPKPTKG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacccagggtatcgccccggcgatcgcgcaggcgttggaaaaacgcggctac
aaagatttgacccccgtgcagcaggccatgcttgcgccggaacttgccgacaaggacgcg
ctggtttccgcgcagaccggttccggcaagaccgttgccttcggcatcgcgcttgcgacc
acgctgctgcgtgacaacacccgtttcggccaggccgctgcccctctggcgcttgccatc
gcccccacacgcgaactggccatgcaggtcaagcgcgagctggaatggctctacgaattt
gccggtgtctccatcgcctcctgcgtcggcggcatggatatccgcaatgagcgccgggcg
ctggagcgcggcgcgcatatcgtcgtcggcacgcccggccgtctctgcgaccacatcaag
cgcaatgcactcgatctctcatcgatccgcgctgtcgtgctcgacgaagccgacgaaatg
ctcgacctcggcttccgtgaagatcttgaattcattctggaggaatcgcccgaagatcgc
cgcacgctgatgttctcggccaccgtgccgcgcagcatcgccaagctggccgaaagctac
cagaagaacgccgtgcgcatcgccaccgcttccgaacagaagcagcatgtggatatcgaa
tatcgcgcgcttctggtttcgccttccgatcgcgagaacgccatcatcaatgcgctgcgc
ttttacgaagcccgcaacgccatcgtgttctgctccacccgcgccgcggtgaaccacctg
acggcccgcctgaacaatcgtggcttctccgtcgtggctctctccggcgaactgacgcag
aacgagcgtacacatgccctgcaggccatgcgtgacggccgcgcccgcgtttgcgtggcg
acagacgttgccgcccgcggcatcgacctgcccggcctcgaactcgtcatccatgccgac
ctgccgaccaattccgaaacacttctgcatcgctcgggccgcaccggccgcgccggtcag
aagggcgtcagcgccatcgtggtgccggtcagccagcgccgcaaggccgagcgcctgctc
gaaggcgccaaggtcagtgccgcatgggtacacccaccctccgttgaagagatcgtcgag
cgcgacggcgcccggcttctggccgatcctacgctgagcgaagcagtggcggatgacgaa
cgcgatttcgtgaccaaactgctggaacagcatggcgcggaaaaagtcgcggcggccttc
gtgcgcctttatcatgcggggcgttcggcaccggaggacatttttgaagtcgcgcttgat
aacacccgcaagccgcgccgcgacagtttcgaaacacccgaaaacaacgctccgcgccgc
gacaggtccgatttctccgacagtgcctggttctccctgtctgtcggtcgcaagcagagt
gcggaaccgcgctggcttatcccgatgctctgccgtttcggcaagatcacccgccaggat
atcggcgcgatccgcatgcaacagaccgaaaccttcgtggaactggcagccgacgccgtc
gaccgcttcacctccgccatcggcaaggacatgacgctcgaaaagggcattcgcctgaag
gcgcttgagggcaaacccgagatgaccggcggcttccgcgaagacacgcggccggccaag
gcccagcggaagttcagcaagtccgacaacgcgagcgccccccgcgatgatcgcaagggc
gaagacaagccctggaaaaagaaaaagccctttggcgacaagccgaaatatgagggcaag
aaggacaagccattcgaaaagcgtgggccaaagccgacaaagggttga
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