Agrobacterium tumefaciens S33: AWN88_21155
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Entry
AWN88_21155 CDS
T04213
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AWN88_21155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_21155
Enzymes [BR:
ata01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AWN88_21155
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AWN88_21155
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AWN88_21155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AMD60652
LinkDB
All DBs
Position
linear:2059000..2059896
Genome browser
AA seq
298 aa
AA seq
DB search
MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPEDFAGLIEGKTIISLGRRAKYL
LIDLEDGLTIVSHLGMSGSFRVEAEADAEGSIPGVFHHPRSKDGKHDHVVFHLDKGEERV
CVIYNDPRRFGFMHLVERSKLDLYPAFAELGPEPTGNTLSADYLASRFDGKSQPLKSTLL
DQKVIAGLGNIYVCEALWRAHLSPLRAAGTLVTKGGKPTAKLVDLTEKIRDVIADAIAAG
GSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCRGTVERVVQAGRSTFYCAACQK
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccagaagtcgaaaccgtcagacgcggccttgctcccgccatggaaggg
gcaagggttcgcaagctccatctcggccgccccgacctgcggtttccgtttccagaggat
ttcgcggggcttatcgaggggaagacaatcatctcgctcggaaggcgggcaaaatatctt
ctgatcgacctggaggacgggctgacaatcgtgtcccatcttggcatgtccggctctttc
cgcgtggaagcggaagccgatgcagaaggcagcatacccggcgtgttccaccatccccgc
tcgaaggacggcaagcacgaccacgttgtctttcatctggataaaggcgaagagcgcgtc
tgcgttatctataatgatccgcgccgcttcggcttcatgcatctggtggagcgcagcaag
ctcgatctttatcccgcctttgcggaacttggcccggagccaacaggcaatacgctgagc
gcggattatctcgcgagccggttcgacggtaaaagccaaccgctgaaaagcacgctgctg
gaccagaaggttattgccggcctcggcaatatctatgtctgcgaggcgctgtggcgcgcc
catctttcccccctgcgtgccgccggaacgctggtaacgaaaggcggcaagcccacagcg
aagcttgtcgatctcacggagaaaatccgcgatgtcatcgccgatgccatcgccgccggg
ggctcatcattgcgcgaccacatacagacggatggaacgcttggttatttccagcattcc
ttttcggtctacgatcaggaggggcagccttgccgtacccccggctgcaggggtacggtt
gaaagggtggtgcaggctggccgctccaccttttattgcgccgcctgccagaaatga
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