Agrobacterium tumefaciens S33: AWN88_21210
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Entry
AWN88_21210 CDS
T04213
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata02020
Two-component system
ata02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AWN88_21210
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AWN88_21210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ata03021
]
AWN88_21210
Transcription machinery [BR:
ata03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AWN88_21210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_23
HTH_Crp_2
HTH_Tnp_ISL3
2Fe-2S_thioredx
Arg_repressor
HU-DNA_bdg
Motif
Other DBs
NCBI-ProteinID:
AMD60661
LinkDB
All DBs
Position
linear:complement(2069549..2071099)
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AA seq
516 aa
AA seq
DB search
MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLSN
DMPAEADNFGDSDGDGAGKSPSVTADSDDWYGDRAANLGEQLDTSFENVFPDDGEPRKAD
APELASQWKSMPGQESGESYDLDDFVAAKQSLGDHLSQQLPLSISSPEDRMIADVLIGQL
DETGYIAADAVDDVAERLGAAPSTVERVLKTLQGFDPPGVFSRSLSECLAIQLAQKDRLD
PAMRAFIDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYDSAVSETIVP
DIIVRPSSSGGWLVEINPETLPRVLINQSYFAEVSKHKARAGEDQDFLAECMQTAHWLTR
SLDQRTRTIMKVATEIVRQQDAFLLNGVDHLRPLNLKTVADAIKMHESTVSRVTSKKYML
TPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAADAVLSDDDIVDNLKKNG
IDLARRTVAKYREAMNIPSSVQRRREKKALARLSAF
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcattgtctgccagccttttgctgcgtcaaaaccagtctctcgtgatgacaccgcaa
ctgatgcagtccatccagctgcttcagatgacgcatttcgagttgacacagtttatcgcg
caggaggtggaacgtaatccgctgctggaaattgcggcaaacgatggcgatttgagcaat
gacatgccggcggaagccgacaatttcggcgacagcgatggtgacggcgcgggaaaatcc
cccagcgtgaccgcggatagtgacgactggtacggggatcgcgccgccaatcttggcgag
caactcgacacgagcttcgaaaacgtctttcccgacgatggcgagccgagaaaggccgat
gcgcccgaactggcgagccagtggaaatcgatgccgggccaggaatccggcgaaagttac
gatctcgatgatttcgtcgctgcaaaacagagcctgggcgaccatctcagtcagcaattg
ccgctctccatctcttcccccgaagacaggatgatcgccgatgtgcttatcggccaactc
gatgagaccggctatatcgccgcagacgctgtcgacgacgtcgccgagcggctgggagcg
gctccttcgactgtcgagcgggttctgaagacactccaaggcttcgatcctcccggcgta
ttttcacgttcactgagcgagtgtctggcgatccagctcgcgcagaaggaccggctcgac
ccggccatgcgggctttcatcgacaatctcgagcttctggcgaaacgggatttcgcctcc
ttaaagaaactctgcggggtcgatgaggaagatctactcgacatgctggcggaaatccgc
acgctcaatccacgccccggtgcaggctacgattcagcggtttcggagaccatcgttccc
gatatcatcgttcgtccctcctcttccggcggctggctggtggaaatcaatcccgagacc
ctgccacgcgtgctcatcaaccagagctatttcgccgaagtctcgaaacacaaggctcgc
gcaggagaggaccaggactttctggctgaatgcatgcagaccgcccattggctgacccgc
agcctcgaccagcgcacccggacgatcatgaaggttgcgacggagatcgtgcgtcagcag
gatgcctttctcctcaatggcgtggatcacctgcggccgctgaacctgaagacggttgcg
gacgccatcaagatgcacgaatccaccgtcagccgcgtgacatcaaagaaatacatgctg
acgccacgggggctgttcgagctcaaatatttcttcagcgtatcgatcagcgctgtggaa
ggcggtgacagccattcagcggaagcagtccgtcaccgcatcaaggccatgattgcgcag
gaagcggctgatgcggtgctttccgacgacgatatcgtagacaatctaaagaagaacggt
atcgatcttgcccgccgcaccgtcgccaaatatcgggaggcgatgaacatcccctcctcc
gtgcagcgacgccgggaaaagaaggctcttgccaggttgtccgccttctga
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