KEGG   Atopobium sp. oral taxon 416: J4859_00135
Entry
J4859_00135       CDS       T07170                                 
Name
(GenBank) D-alanine--D-alanine ligase
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
atb  Atopobium sp. oral taxon 416
Pathway
atb00470  D-Amino acid metabolism
atb00550  Peptidoglycan biosynthesis
atb01100  Metabolic pathways
atb01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:atb00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    J4859_00135
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    J4859_00135
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01502 Vancomycin resistance
    J4859_00135
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:atb01011]
    J4859_00135
Enzymes [BR:atb01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     J4859_00135
Peptidoglycan biosynthesis and degradation proteins [BR:atb01011]
 Precursor biosynthesis
  Amino acid ligase
   J4859_00135
SSDB
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N CPSase_L_D2 ATP-grasp_3 ATP-grasp_4 ATP-grasp GARS_A ATPgrasp_ST DUF6180
Other DBs
NCBI-ProteinID: QUC03427
LinkDB
Position
28024..28995
AA seq 323 aa
MTRDVLFKLHIAILAGGWSDERNISMESGQHCLEALTEAGFKDLTLFNVADSDFVDRFSA
GHFDFAFITMHGRYGEDGCIQGFLETIHIPYTFSGVLASALGNDKVAAKVMYRNAGIPVP
RGETVDISAADDSETIDRLIEELSFPIFVKPSANGSSYGVTRVNKHEELPLAIKKAAAEG
DRVLVEQCIEGTEITVPVIGTEDPQVLPIVEVVFDNADYYDVSVKSEPASLHHIIPARLT
DEETRLASDYAIKAHKALGCRGTSRSDFIVTKEGIPYILETNMIPGMTKRSLLPDSAERA
GIPFSELCTRFVEWGLKESVHEK
NT seq 972 nt   +upstreamnt  +downstreamnt
atgacaagggatgtcctattcaaattgcacattgcaattcttgcaggcggttggtccgat
gagcggaatatttcgatggagtcagggcagcactgccttgaagccttaacagaagcggga
ttcaaagatctgacgctgttcaacgtagccgattccgacttcgttgatcggttctcagcg
gggcattttgattttgccttcatcacgatgcatggccgctacggggaggacggctgcatc
caaggcttccttgagaccatacatatcccgtataccttctccggcgtgcttgcctcagcg
ttgggtaacgataaggtagcagcaaaggtcatgtatcgcaatgcgggcataccggtgccg
aggggtgagacggtcgacatcagtgccgcagatgactctgagaccatcgatcgcctgatt
gaagagctctcgttcccgatcttcgtcaaaccctccgcgaacggctcaagctatggggtg
acccgcgtcaataagcacgaagagcttccgttagcgatcaaaaaggccgctgctgaaggt
gatcgtgtgctggtcgagcagtgcattgaaggtactgagatcacggtaccggtcatcggc
actgaggacccgcaggtgcttccgattgtcgaggtagtcttcgacaatgcggattactac
gacgtgtccgtcaagagcgaaccagcttcgctgcaccatattattccggcacggctcact
gacgaagagaccaggctcgcttccgattacgctatcaaggcacacaaggcgctgggttgc
aggggaacctcacgcagcgacttcatcgttacgaaagaggggataccctatatcctggag
accaacatgattccgggcatgactaagagaagcctgctgcctgactcagctgagcgtgcg
ggtatcccattctctgaactctgcacccgctttgtagagtggggtctcaaagaaagcgta
catgagaagtaa

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