KEGG   Atopobium sp. oral taxon 416: J4859_00140
Entry
J4859_00140       CDS       T07170                                 
Name
(GenBank) DNA polymerase III subunit epsilon
  KO
K03722  ATP-dependent DNA helicase DinG [EC:5.6.2.3]
Organism
atb  Atopobium sp. oral taxon 416
Brite
KEGG Orthology (KO) [BR:atb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atb03400]
    J4859_00140
Enzymes [BR:atb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     J4859_00140
DNA repair and recombination proteins [BR:atb03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    J4859_00140
SSDB
Motif
Pfam: Helicase_C_2 RNase_T DEAD DEAD_2
Other DBs
NCBI-ProteinID: QUC03428
LinkDB
Position
28995..31964
AA seq 989 aa
MSEKELLTLNEVLLPNTPKHIREQYQTLAERAAKTDFGPLEDNIVVIDTETTGLSFKNCE
LVEIAAARISSKKVVDTFDTFVHPTGLIPPEIVKLTNIRQVDVADAPSAPEAVAKLVEFV
RGDVVLAHNAAFDRTFIESVPGGIEVSDNWIDTLALSRIALPSLTTHRLSDLAEIFGSDS
VTHRSKDDVVALCGVWPIILQGLADLPAGLLDYLANMHPEVEWSYRPIFSYLAHQREPEV
FSLKDTRNELLKQVPEHEREDANDKKEPFQVPSPAEIDAIFAEGGDVSCAYDHYEQRPEQ
LKMAQEVREALETSTHRTIEAGTGTGKSLAYLVPEILFAQKNNVSVGVATKTNALADQLI
SHELPLLNTVLENGVSYHTLKGWNHYPCLYRMEKAYQEELPINIVISHAQGRPSSKRTIA
QDMLTALAVSYTYVAESADEDLDAMGIRWKNVPRELITITSHECLHTKCPFYSHECVAYT
ARRLAAGCDVVVTNHSLLLRNVLAEGHILPPIRHWVIDEAHSFESEARSQWATEISAVDI
QDIFEVLGDAKKGALARACNSVVGKDGATLALGLIQKASKAVQHASLVTSELMAAIHDLI
SLAGKSSYEGTTLWINEEVRASGRWRAVVETGTEAVRSLEEASKRLKEAQTTFSLTTNEG
DNILGDPAIAFDDLVNAISLIVLKPDPAYVYSAQLYRQTNQQSKNKRLRSERLVAEKLDI
GQDLGTQWLPGMKSVIFTSATMAVEHDFSHFNHAVGLDKLPKESYKDIQLPSSFDFDDNM
SVIVAKDLPLPGNPSYLTALDDLLFDIHISMQGSVLTLFTNRREMEKVYNELQPRLAREG
LELIYQGPRSSPRQLRDQFIRDRELSLFALKSFWEGLDAQGDTLRCVVVPKLPFASPHDP
LVQEREEREPRAWWRYQLPDAVLSVKQAAGRLIRTKTDTGVLVLCDSRLVKKRYGRDFIE
SMPSHTTAELETRNIGSYLKMWRASHERR
NT seq 2970 nt   +upstreamnt  +downstreamnt
atgagtgagaaagaactactaaccctcaacgaggtactccttccgaatacccctaaacat
atccgtgaacagtatcagacacttgcggagcgtgctgcgaagaccgatttcggaccgttg
gaagacaatatcgtggtgatcgataccgagacaaccggattgtctttcaaaaactgtgag
ctggttgagatcgctgccgcacgcatctctagtaagaaggtggtcgacaccttcgatacc
tttgtgcacccaaccggtttgatccctcctgaaattgtgaagcttaccaatattcgccaa
gtcgacgttgcagatgccccgagcgcacctgaggcggtcgcaaaactggtggaatttgtg
agaggggatgtggtcttagcccataacgcagcctttgaccggacctttatcgaatccgtt
ccgggtggtatagaggtcagcgacaactggatcgatacgctcgcactgtcccgcattgca
ttgccttcgctgacaactcatcgactctctgatctggcagagatcttcgggagcgattcg
gtgactcaccgctcaaaggatgatgtggtggcactctgtggggtatggccgatcattctg
caggggcttgcagatttacctgcgggattactggactatcttgcaaatatgcaccctgaa
gtcgagtggagctaccgtcccatcttctcgtatctggcgcatcagagagaaccggaggtg
ttctcactcaaagatacccgcaatgaactactgaaacaggtgccagagcatgaaagggaa
gatgcaaacgataaaaaagaaccatttcaagtgccttctcctgcagagatcgacgcaatc
tttgccgagggtggcgatgtaagttgcgcttatgatcactatgagcaacggcccgaacag
ctgaagatggcgcaagaagtgcgtgaggcgcttgaaacctcgacgcaccgcacgattgaa
gcggggaccggtacgggaaaatcccttgcctacctcgttcctgaaatcctgtttgcccag
aagaacaacgtgagcgtcggtgtggcgactaagacgaatgcgctggctgaccagttaatc
tcacatgaactgcccctgttgaacactgtcttagaaaacggggtgtcctaccataccctc
aaagggtggaaccattacccttgtctctatcgcatggaaaaggcctatcaagaggaatta
ccaatcaatatagtgatctctcatgctcaaggccgtccaagctccaaacgtacgattgcc
caggatatgctcactgctttggcagtgtcttatacctacgtcgcggaatctgcggatgag
gacctcgacgcaatgggcatacgctggaagaatgtgccgcgtgagctcattacgatcacg
tcccacgagtgtctccacacaaaatgccccttctattcgcatgagtgcgtagcctatacc
gcgcggcggcttgctgccggctgcgatgtggtggtgacaaaccattcgctgttgctccgc
aatgtgctagcagagggacatatcttgccaccaattcgccactgggtgatcgatgaggca
catagctttgaatcggaggcccgtagccaatgggcaactgagatctcagcagtggatatc
caggacatctttgaggtgttgggcgacgccaaaaagggtgcccttgcccgtgcatgtaac
tcggtcgtgggtaaagatggtgcaactttggcgctcggtctcatccagaaagcctctaaa
gcagtgcagcatgcgtcgctcgtgacgtctgagctcatggcggcaatccatgatctgatt
tcgcttgcgggcaagtcgagctatgaggggacaaccctgtggattaatgaggaggtgcgt
gccagtgggcggtggcgcgctgttgtggaaacaggcacagaggccgtacggagtttggaa
gaggcgagcaagcgcctcaaagaagcgcagacaacattctcactgaccaccaatgaaggc
gacaacatcctgggggatcccgcgatcgccttcgatgatctcgtcaacgctatcagcctc
attgttctcaagccggatccagcatacgtgtattcggcgcagctctatcggcagaccaac
cagcagagtaagaacaaacgtttgagatcagagaggctggttgcagaaaaactcgatatc
gggcaggatctggggactcagtggctaccggggatgaagagcgttatctttacctctgcg
actatggcagttgagcacgatttctcccacttcaatcatgcagtcggtttggataagctg
cccaaggagtcctacaaggatatccagttaccttcaagttttgacttcgatgacaacatg
tcagtgattgtggcgaaggatctgccgcttccgggtaatccgtcctacctcactgcccta
gacgatctgctctttgacatccatattagcatgcagggttcagtgctgacactcttcacc
aacaggcgggagatggaaaaagtctacaacgagctgcagccccgcttagcccgggaagga
cttgagctgatctatcaaggaccccgttcctctcctcgacagcttcgggatcagttcatc
cgggacagggagctttcgctctttgcgctgaaatccttttgggaagggttagatgcccag
ggggatacactgcgctgcgtggtcgtaccgaagcttccgtttgccagtccccatgatccg
ctggtacaggagcgtgaagagcgtgagccgcgggcttggtggcgctaccagttgccggat
gcggtgctttctgtcaaacaggctgccggtagactgatcagaaccaagaccgataccggc
gtcttggtcctctgtgactcccgtctcgtcaaaaagagatacggtcgggactttatcgaa
tcgatgccgtcacatactacggctgagttggagaccagaaatatcggttcttacctcaaa
atgtggcgcgcctcacatgagcgtagatag

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