Atopobium sp. oral taxon 416: J4859_00610
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Entry
J4859_00610 CDS
T07170
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atb
Atopobium sp. oral taxon 416
Pathway
atb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4859_00610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atb03400
]
J4859_00610 (mfd)
Enzymes [BR:
atb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4859_00610 (mfd)
DNA repair and recombination proteins [BR:
atb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J4859_00610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
TRCF
ResIII
AAA_22
UB2H
Cas3-like_C_2
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QUC03510
LinkDB
All DBs
Position
129140..132610
Genome browser
AA seq
1156 aa
AA seq
DB search
MFINRVARKLYTAPELRKILPDFDHGNDVTLSVGQSARPLVLAALWSRSPRPTLLVVSGE
ESAERSAHALAAWLGMENVLRYPERPDYPWSDRAPDMALIGKRCQAVDALSEGKPCVVVA
SASALMRRVPPKGSGYFASSTFKVGDVVPLEEVSPLLVGMGYAQERDVDAPGEFYVHGDS
VDVHPAQATSPVRLEFFGDEIDRIRRMVPSTGQTIGELKEVTILPCREMAYSPKRIARAT
EKLYAQAQMNTKVAEDLELIKQASSAPALDCYMPVLYGGSASPLEFIATDTLVCLAEPRA
LFDNCQRAFDDITSAAQSAGEHIEGLYTAPREMDFGKQQRLSFASILQQKTRLSATLRVH
HPNIAGSDTKLIGSVRQMLNDKMSVIFAVPDRGAREALELTFNDESIPFIESLGADPKNR
VPVLDPMANTDVVPLPEAEVTFFDAPVPAGIIIPTAKLGVLSISDLTAHMAKHHHRVRRI
DPTSVTFPFKPGDYVVHATHGIALFSKIVRQEVAGKMRDYFLLQYAGGDKLYVPLEQVDR
ITRYVGPDGEAPRLTRLNTADWSRATGKARKSAKKLAFDLVDLYTRRASVAGFAFGPDTP
AQEEMESSFPYELTPDQKSAIQDIKADMESPKPMDRLLCGDVGFGKTEVALRAAFKCCTY
KKQVMVLCPTTILAEQHFQTFYERFTPFDLTVKVLSRFVTPAQQRKTLKGFEDGSVDVLL
GTHRLLSNDVNPHDLGLVIIDEEQRFGVQAKEQLKNLREQVDVLTLTATPIPRTMQMAMS
GVRDMSLIMTPPLGRKPVKVSVSEWDPDVVSAAIRREIQRKGQVYYVSNRVQTIDDAVER
VRQAVPEARIGVAHGKMSPREVEDVMMRFEEHEIDVLVSTTIIESGIDNPHTNTLIIEDS
QRLGLAQLYQLKGRVGRGGTQAYAYFMFPGAVSLTPEAQDRLTAINEYQDLGSGMRVAMR
DLEIRGAGSLVGAEQHGNLSSVGFDLFTQMLGEAVSEARGEAPSMDQDEITINLPADFYL
AEEYVPAIDKRVLIYRQLASAQELRVVDELQEHTEHGFGALPTAGKNLFDRARIRIRAQR
MGISAISLISGRLVFQGIEVPRNKARDLRAKHALYYAKSKLLRYPFHKESEDLLPAALGI
LEDIGGGDDEDEEASA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtttattaaccgtgtggcgagaaagctctatacggctcctgaactgcgcaaaatcttg
ccggattttgatcacggaaacgacgtgaccctctcggtcggacagagcgcccgacctttg
gtcttagctgctctctggtcgcgcagtccccgccctacgctcttagttgtttcaggggag
gaatccgcggagcgcagtgcccacgccctcgccgcttggctcggtatggaaaacgtgctg
cgctaccccgagcgcccggactatccctggtctgacagagcgccggacatggcgctgatt
ggcaaacgttgccaagcggttgacgcgctctccgaaggcaagccctgcgtcgtggtggca
agcgcgagtgccctgatgcgccgcgtgccgcctaaaggctcaggctacttcgcttcgagc
acctttaaggtgggcgacgtggtacctctcgaagaggtctcacccttgctggtcggtatg
ggctacgcgcaggagcgcgatgtggatgccccaggtgaattctacgtgcatggggacagc
gtcgatgtccatcccgctcaggcgacttcgccggtgcgcctggagttcttcggggatgag
attgaccgcatccgtcgcatggtgccttcaaccggtcagacgattggtgagctcaaagag
gtcacgatcctgccgtgtcgggagatggcgtactcgcctaagcgcatcgcccgcgccact
gagaagctctatgcgcaggcgcagatgaatacgaaggtggcggaggatcttgagctgatc
aagcaggcctcgagcgcccctgcgcttgactgctatatgccggtgctctatgggggatct
gcctctcctttggagttcatcgcgaccgacaccttggtgtgcctcgctgagccgcgggcg
ctcttcgataactgtcagcgagccttcgacgatatcacctccgccgcgcagagtgcgggc
gagcatatcgaggggctgtatacggctccgcgtgagatggacttcggcaagcagcagcgc
ctgtcctttgcttcgatcctgcagcagaagacacgcttgagtgctacgcttcgagtccat
catcccaatatcgcgggatcagacacgaagctcataggctcagtgcgccagatgctcaac
gataagatgtcggtgatcttcgcggtgcctgaccgtggggcacgcgaagcgttggaactt
accttcaacgacgaatccatcccctttatcgagtctttgggcgccgatccgaagaacaga
gttcctgtcctggatcccatggcgaacaccgatgtggtgccgctgccggaagctgaagtc
accttctttgacgcgccggtcccggcgggcatcattattcccaccgccaagttgggcgtg
ctttcgatctccgacctgacggcccatatggccaagcaccatcaccgcgtgcgccggatc
gacccgacgagcgtgaccttcccatttaagccgggcgactacgtcgtccatgcgacgcac
ggtatcgccctcttcagcaagatcgtgcgtcaggaagttgcgggcaagatgcgcgactat
ttcctcttgcagtacgccggaggggacaagctctacgtgccgctcgagcaggtagaccgc
atcactcgctatgtgggacccgacggggaagccccacggctcacccggctcaacaccgct
gactggtcacgggcgactggtaaggcgcgcaagagtgccaaaaagctggccttcgacttg
gtcgatctctacacccgccgtgcctcggttgctggattcgctttcggtcccgatactccg
gcccaggaagagatggagtcaagcttcccctatgagctgacgccggatcagaagtcagcg
atccaggacatcaaagcggacatggaatcccccaaaccgatggaccgtcttctatgtggg
gacgtggggttcgggaagaccgaggtcgcgctgcgcgcggccttcaagtgctgcacctac
aagaagcaggtcatggtcctctgtccgacgacgatcctggctgagcagcacttccagacc
ttctacgagcgcttcacgccctttgacctcacagtcaaggtcctgagccggtttgtcacg
ccggcccagcagagaaagactctgaaaggctttgaggacggatcggtggacgtgctgctc
ggaacgcaccgcctactctccaacgatgtgaacccccacgatctgggattggtcattatc
gacgaggagcaacgcttcggcgtgcaggcaaaggagcagctcaagaatctccgtgagcag
gtcgatgtgctgaccctcaccgctaccccgatcccgcgcacgatgcagatggcgatgagt
ggggtgcgcgacatgtcgctgatcatgacgccgccactgggaagaaagccggtcaaagtg
agcgtctctgagtgggaccctgatgtggtgagtgcggcgatcaggcgtgagatccagcgc
aagggacaggtgtactatgtctcgaaccgtgtgcagacgatcgacgatgcggtcgagcgc
gtgcgccaggcggtgccggaagcgcgcatcggtgtagcgcacggaaagatgagcccccgt
gaggttgaggatgttatgatgcgctttgaggagcacgagattgacgtgcttgtctcaacc
acgatcatcgagtccggcatcgataatccccacaccaacactctgatcatcgaggactca
cagcgcttaggattggctcagctctatcagctgaagggtcgcgtgggccgtggcggaacg
caggcgtacgcctacttcatgttccccggagcggtgtcgctcacccctgaggcacaggac
cgcctgaccgcgatcaatgagtaccaagatttgggaagcggcatgcgcgtcgcaatgcgc
gacctcgagatccgtggcgcaggttcactggtgggagccgagcagcacggcaacctttcc
tcggtgggtttcgacctcttcacccagatgctgggtgaggcggtgagcgaagcgcgcgga
gaggcgccctcgatggatcaggacgaaatcacgatcaatctgccggccgacttctatctg
gctgaggagtacgtcccggcaatcgataaacgtgtcctcatctaccggcagttggcttcc
gcacaggagctgcgcgtcgtggacgaactgcaggagcataccgaacatggattcggggca
ctcccgacagccggaaagaacctcttcgaccgggctcggatccgcatccgtgcacagcgc
atggggatctcggcgatctcgctgatatcaggcagattggtctttcagggcatcgaagtc
ccacggaacaaagcgcgggatttacgggcaaagcacgcgctctactacgccaaaagcaaa
ctgctccgctatcccttccacaaggaaagtgaggacctcctccccgccgctttgggcata
ttggaagacattggcggaggagacgacgaggacgaagaggcaagcgcgtag
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