Atopobium sp. oral taxon 416: J4859_05285
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Entry
J4859_05285 CDS
T07170
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
atb
Atopobium sp. oral taxon 416
Pathway
atb03420
Nucleotide excision repair
atb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J4859_05285
03430 Mismatch repair
J4859_05285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atb03400
]
J4859_05285
Enzymes [BR:
atb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4859_05285
DNA repair and recombination proteins [BR:
atb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4859_05285
MMR (mismatch excision repair)
Other MMR factors
J4859_05285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
AAA_19
Viral_helicase1
UvrD_C
SLFN-g3_helicase
AAA_16
PhoH
Rop-like
AAA_12
DUF6517
NPHP3_N
DUF4407
Motif
Other DBs
NCBI-ProteinID:
QUC04348
LinkDB
All DBs
Position
complement(963369..965546)
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AA seq
725 aa
AA seq
DB search
MSEALTNKQQKALQNDPVFREEQEKLSETYKKLLELRDELNHRLEVTHKEAAKDLHDMSE
EITQDYGSDDETMETLAAIETLNSVIDSYNQAHDFDVEKLRRVMVLLRQPYFAKVTLKMH
PNHPPRDIYIGVAGVMDKDSHPLIVDWRSPVAETYYNQENGKTSYKVNGKRHDVELLLRR
QFDLTEDKLNMYFDTTVAIEDALLLKALKSPHTEKLQAITATIQKEQNAVVRHSDIPALI
VDGIAGSGKTSVMLQRIAYLFYQQRETLKADQVYLFTPNNVFQSYIDTVLPSLGESNPQS
FTWRNFIESQGIADRANGRDTDPAELKKMETTVKGLTLEPDDLRGISVGDVQLIKASQVK
NAFAKFPRTPLGPRLIAMVKDVLHERLETRLTNLSRDEGVHEEMLGADIEDQIAVFGEPI
NPVDEADTTRLAKLYVDHKYSDVHDLIETAGWLRIDRIGQRLLGHQLNAAEYLYLRSLIT
GAGDRNARYVMVDEVQDYSPAQLMVMARYFSNAHFMLLGDARQSIFEGSVSFDQLEQILK
DAGITKKDADIKRLKLLTSYRSTPEITNLFMSLYERNEAIQTHSVQCKGVAAKLLVTKDA
DTYLDRLRKLVEEQREEDGLTAIVTDDRARAHWIGKQLGKSVRVLEDKDILPLSGVVVMD
LAMAKGLEFDTVIVPDVQASVYEATPRYRRRLYTAISRAMHKVVLVSQGEPTSMLEGSPV
EKENL
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggccctaacaaacaagcagcagaaagcgttgcaaaatgatccggtattccgg
gaggaacaggagaagctctccgaaacctacaagaagctactggagctcagggatgagttg
aatcatcgccttgaggtgacccacaaagaggctgccaaggacctgcacgatatgtctgag
gaaatcacccaagactacggttcagacgatgagacgatggagaccttggccgcaatcgag
actttgaactctgttatcgactcctacaaccaggctcacgatttcgatgtcgagaagctg
cgccgcgtgatggtactcttgcgtcagccctactttgcgaaggtcacactcaagatgcat
cccaaccatcccccacgcgacatctacatcggggtcgccggcgtgatggacaaggactcc
catccgctgatcgtcgattggcgctcaccggttgcagagacctactacaaccaggagaac
ggcaagacgagctataaggtcaacgggaagcgccacgatgtggagctgctactgcgccga
cagttcgatctcaccgaagataagctcaatatgtacttcgacacgacggtcgcaattgaa
gatgcccttctgctcaaggcactcaagtcccctcacaccgagaagctgcaggcgatcacc
gccacaattcagaaagagcagaatgcggtcgtgcgccacagcgacattccggccttgatc
gttgacggaatcgccggctccggcaaaacctccgtgatgctgcagcgcatcgcctacctc
ttctaccagcagcgtgagacgctgaaggcggaccaggtctacctctttacgccgaacaac
gtgttccaaagctacatcgacacggtgctcccctcgttgggtgagtccaacccgcagagc
ttcacctggcgcaactttatagagtcgcaaggcatcgctgaccgtgcgaacggccgggac
actgacccggcagaacttaagaagatggaaaccacagtcaaaggcctcacgcttgaacca
gatgatctgcgcggtatcagtgtgggtgacgtacagctgatcaaagcatcacaggtaaag
aacgcctttgcgaagttcccacgcaccccgttgggaccgaggctgattgcgatggtgaag
gacgtgctgcacgaacgtcttgaaacccggctcaccaacctctcacgcgacgaaggcgtc
cacgaagagatgctgggagctgatatcgaggaccagattgcagtcttcggtgaaccgatc
aaccccgtcgatgaggcagacaccactcgcttagccaagctctacgtggaccacaagtat
tcagacgtccacgatctgattgaaactgcaggctggctcagaatcgaccgcatcggacag
cgcctgcttggccaccagctcaatgccgcagagtacctctacctgaggtccttgatcacc
ggcgccggcgaccgcaacgcccgttacgttatggtcgatgaggtacaggattactcaccc
gctcaactcatggtgatggcgagatacttcagcaacgcccactttatgctcttaggtgac
gcccgccagtcaatcttcgaaggttccgtatcctttgaccagttagagcaaatcctcaag
gatgcaggtatcacaaagaaggacgccgacataaagcgcctgaaattgctcacgagctac
cgctccaccccggagatcaccaacctctttatgagcctctacgagcgcaacgaagccatt
cagacccactcagtgcagtgtaaaggtgtcgccgccaagctcttggtaaccaaggacgct
gatacctacctcgaccgtctgcgcaagcttgtcgaggagcagcgcgaggaagacggcctc
accgcaatcgtgactgatgaccgcgcccgcgcacactggatcggcaagcagcttggcaaa
tcagtacgcgtcctggaggacaaagatatcctcccactctccggggtggtcgtaatggat
ttggcaatggcgaaagggttggagttcgacacggtgattgtgccggacgtccaggcaagt
gtctatgaggctacgccgagatatcgtcgtcgcctctataccgcgatcagccgtgcgatg
cacaaagtagtgctggtgagccaaggtgagcccacctcgatgctcgaaggctcccccgtt
gagaaagagaacctgtag
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